PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_55.54 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 233aa MW: 25527.6 Da PI: 7.5889 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.4 | 3.5e-33 | 49 | 103 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +GghavDGCgEfmp+ g eg+ +alkCaAC+CHRnFHR+e+e evm.model.supercontig_55.54 49 KPRYRECLKNHAVGIGGHAVDGCGEFMPA-GVEGSLDALKCAACNCHRNFHRKETE 103 679*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 51 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-30 | 51 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-29 | 51 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.172 | 52 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-32 | 160 | 231 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.15E-20 | 161 | 230 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-25 | 169 | 225 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEFEDQDEQD EEMGMGTGYE SLGNSTRVKL GGPEAVGTVT GTAHQQNRKP RYRECLKNHA 60 VGIGGHAVDG CGEFMPAGVE GSLDALKCAA CNCHRNFHRK ETEPPSSSAG ELYHPASPPG 120 DAAVRSLLPG TIGRPLALPS TSGGQSRERE FDQEDMSNPM SLGGSGSSRK RFRTKFTQEQ 180 KERMLALAER LGWRIQKHDE EVVQQFCNET GVKRHVLKVW MHNNKHTLGK KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-28 | 170 | 227 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_55.54 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238630 | 1e-146 | AC238630.1 Carica papaya BAC clone 85B16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897413.1 | 1e-144 | LOW QUALITY PROTEIN: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 2e-71 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0D2MJ39 | 1e-100 | A0A0D2MJ39_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NP28 | 1e-101 | A0A1U8NP28_GOSHI; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | evm.model.supercontig_55.54 | 1e-174 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-71 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_55.54 |
Publications ? help Back to Top | |||
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