PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_36.149

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 289aa MW: 32751.4 Da PI: 8.0725

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_36.149	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	107	123	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C k+F+r nL+ evm.model.supercontig_36.149 107 FSCHVCFKTFNRYNNLQ 123 89************998 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEPLDISCSF LAASSTKPVI EPLDLFPTLD LFGSQEKKHH ENPPLQEYNS NADEEEDVTV 60 ALHIGLPDHC FSEQTTINTD SKSKNYTAAS QYWIPTAEQI LIGFTHFSCH VCFKTFNRYN 120 NLQVCMHYDI QLLHLYICIY NGMINGMQMH MWGHGSQYRK GPDSLKGSQP RAMLGIPCYC 180 CAEGCKNNIE HQRAKPLKDF RTLQTHYKRK HGLKSFMCRK CGKLLAVKGD WRTHEKNCGK 240 RWPCVCGSDF KHKRSLKDHI KAFGSGHAPF PASTSFESLE DTASSLLL*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_36.149

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900772.1	0.0	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-102	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1Q3B6Q8	1e-125	A0A1Q3B6Q8_CEPFO; Zf-C2H2_4 domain-containing protein
STRING	evm.model.supercontig_36.149	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_36.149

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]