PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_31.37
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ZF-HD
Protein Properties Length: 276aa    MW: 30581.2 Da    PI: 8.392
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_31.37genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.95.1e-3374131260
                  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                                  ++vrY+eClkNhAa++Gg+++DGCgEfmps g++g+++alkCaAC+CHRnFHR+ev+ e
  evm.model.supercontig_31.37  74 STVRYRECLKNHAANVGGNVYDGCGEFMPS-GDDGSIEALKCAACDCHRNFHRKEVDGE 131
                                  579**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2471129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2976128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3077128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.04878127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.6E-18205267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29207270IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-28208265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEFRGEEGDI RVAGSSSPSG ERRRDGNQNG ITTTILTSIQ TIDHTPSHSH RQLDRNITSK  60
ISSISVGSNP AKPSTVRYRE CLKNHAANVG GNVYDGCGEF MPSGDDGSIE ALKCAACDCH  120
RNFHRKEVDG ETTQLGSSSN SRRNLILNPL QLPPPLPSPT MLHHHQKYPM HTATPMSVAF  180
GGGAESSSED LNPEGVVQPF PPPFGLSKKR FRTKFSQEQK EKMLEFAEKV GWRINKQDEE  240
QVERFCAEVG IKRQVFKVWM HNNKNNTVKK QPEDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-252092661875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_31.37
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901507.10.0zinc-finger homeodomain protein 5-like
SwissprotQ9FRL51e-70ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A061FD051e-107A0A061FD05_THECC; Homeobox protein 33 isoform 1
STRINGevm.model.supercontig_31.370.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-70homeobox protein 33