PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_184.27
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 361aa    MW: 39790.7 Da    PI: 8.5484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_184.27genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-1364108147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  evm.model.supercontig_184.27  64 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 108
                                   789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.65859113IPR017930Myb domain
SMARTSM007175.3E-1163111IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-1563114IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-1863111IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-664108IPR009057Homeodomain-like
PfamPF002493.1E-1164108IPR001005SANT/Myb domain
CDDcd001672.46E-866109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVSLNPNPAQ GFYFFDPMNF GLPGLNPPPP PAAPPSTLPP FLLLRLRLPP PPQLPCLFLT  60
IPSRESWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTSEH  120
VPPPRPKRKA LHPYPQKAPK NVSAVSQVSG PFPSSSALLE PGCMYRPDSL SVVGNPIAPA  180
PMSSWSYNSV SPASMTQVTK GLAGPTIAHN CCYSSTNENA PRTWAIDKQV DQGDNGQPKR  240
VMPDFAQVYS FIGSVFDPNS SGHLEKLKQM DPIDMETVLL LMRNLSMNLR SPEFEDHRKL  300
LSSYDVNAKR GEVGGTCENL GTEKSRNAIL SAKKCLILTL NCYCQDEMID TSNKLTGVVA  360
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_184.27
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3815652e-78FQ381565.1 Vitis vinifera clone SS0ABP1YE10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887810.10.0LOW QUALITY PROTEIN: protein REVEILLE 5
SwissprotC0SVG53e-98RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A061DUW21e-161A0A061DUW2_THECC; Homeodomain-like superfamily protein
STRINGevm.model.supercontig_184.270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-90MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]