PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.65
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 425aa    MW: 48951.4 Da    PI: 10.2561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.65genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.8e-162072901295
                                   HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                            B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.gr 87 
                                   k+++l +pk+fae+h        +k + l++++gr W+v+++   + gr    + + W+ Fv+  +Lk+gD++ F+l+ g 
  evm.model.supercontig_132.65 207 KKSNLLIPKEFAERHlkW-----GKRVLLRTQDGRIWDVQYKLHVSYGRfrSHFDSRWRAFVQGSNLKVGDTCFFELKvGG 282
                                   34679**********431.....457***************99655555456789*********************98443 PP

                                   SEE..EEE CS
                            B3  88 sefelvvk 95 
                                    ++ ++v 
  evm.model.supercontig_132.65 283 PKTMFNVV 290
                                   65555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.095138IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-7245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-8346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-17190294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17191292IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-17193293No hitNo description
PROSITE profilePS5086312.379196295IPR003340B3 DNA binding domain
SMARTSM010197.6E-5203293IPR003340B3 DNA binding domain
PfamPF023622.3E-13207289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEHGWREFSD HYSLSHGHLA VFRYDGNGGF HITIFDMTAT EIDYPFAGPN DEAFDPRKEG  60
MNKPCRKRRE KSPLPCPKPS KSIKTSSTSE KASDRHEGLF SDHRRVRQEK VPKIVEQLAE  120
DEKPKALREA IAFKSNNPFL DCHATILYLF SVCIGMSSTN RKCLNSEDYP SVQPTTLDKI  180
ACQRAPTFNF KNPFLVVVMK PCYVKPKKSN LLIPKEFAER HLKWGKRVLL RTQDGRIWDV  240
QYKLHVSYGR FRSHFDSRWR AFVQGSNLKV GDTCFFELKV GGPKTMFNVV IKRAKRDANH  300
GLTTRYGGER RKLRMETGLK TTGKHSSQAT ASGRNFGSKY PFFMLPVPTG FAKEFIKKHD  360
VCSTLETAGG SWAVKLIKFW WEIYIFGWLG FCLLEKILCN KGVVKEKRFG MRRKPDEDDQ  420
HFWI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890120.11e-89B3 domain-containing transcription factor VRN1-like isoform X2
STRINGevm.model.supercontig_132.650.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-11B3 family protein