PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_128.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 273aa    MW: 30289.8 Da    PI: 8.6626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_128.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1524115299
                                   EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   fkvl     ++ +rl +p  f++++ g+++ +  +++l d +g sW v +  +  +g ++l++ W++Fv +n L   +f++
  evm.model.supercontig_128.16  24 FKVL--IGDFA-NRLQIPPAFVKSYpGIIP-SRGQIILCDANGGSWHVDV-LQEVDGCFILGTRWSSFVLDNSLLPHEFLT 99 
                                   5666..44455.57***********65555.5559***************.445555599********************* PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F+++g+s+f  +vk++ k
  evm.model.supercontig_128.16 100 FRYTGNSKF--LVKIYGK 115
                                   *****9999..9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1914118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2216118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.30720116IPR003340B3 DNA binding domain
CDDcd100175.80E-1821113No hitNo description
SMARTSM010191.1E-1423116IPR003340B3 DNA binding domain
PfamPF023625.5E-1323114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-9169238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-8170240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.005176272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMGRRRRTEQ QVASSITTKG PSFFKVLIGD FANRLQIPPA FVKSYPGIIP SRGQIILCDA  60
NGGSWHVDVL QEVDGCFILG TRWSSFVLDN SLLPHEFLTF RYTGNSKFLV KIYGKDGCEK  120
NTLPPACQQV NPDEKAVTQD KETGNTASPT DPDDDDVQIP EPEISISDSF QSRHPFFKVV  180
MGRTYAHVGQ VNIPNVFFKK YMGIKAKSVV LRVSEKSWTV NFVPYSNSCG KFHGGWLNLS  240
KTIICKLEMS VSLNSLMIET LCLKSPSSQV PV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_128.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890570.10.0B3 domain-containing protein Os11g0197600-like isoform X1
STRINGevm.model.supercontig_128.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Representative plantOGRP1628723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-13B3 family protein