PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.76
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 714aa    MW: 78696.3 Da    PI: 8.6511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.76genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000367798223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  kC +C + F ++ n++rHir+H
  evm.model.supercontig_107.76 77 KCDKCAREFCSPINYRRHIRVH 98
                                  7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.03476103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPVAKLKASN ATDVVKSEEG NDSLDTFIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ  60
DLPGWPLLTP LKVQMQKCDK CAREFCSPIN YRRHIRVHHR LKKLDKDSIK NRELLGAFWD  120
KLSVDEAKDI VSFKSVALED VPGSSVVKAL TTLIRKPGFC ALPQVCLRAG SVLLDIIQAR  180
PSRFPISSQE LFTILDDASE KTFLCGAAVS IQKYVFDGEA GKIGLETKNL VACTSFLLEQ  240
RLVKAWLADK DAEALRCQKM LVEEEEAAQR RQAELLERKK QKKLRQKELK SKDQRDGEKE  300
DVKDSVNISD ASEAQLLAET SCPLAAFDFD TLERDMVPAE NSSTLELVKG LNTKEDVNHE  360
SQTGFASCAY TDPSGGPAAE RRMVQGGGRR HMVVARWQVP PKSQRGMPHG FHANLSSHAS  420
KLGASQKHGL NKDLRPLQLV NGNKVWSRKN KLENDGGSIK PRTQDETVNQ PDQGKNCEVL  480
IGSISVALGN CCPQEHNNLA EGRNGCLAEP EVPKRNIHEK PSKNDALHHY GTNRAAVKLW  540
RPVSRHGNKV SIPNGGRELE ANEGAGRSRD ANETLSGESC KRLCATENND NRSEHTASLL  600
QQAVLPGSMP FNSHDAKAFL SLRWKEAIAA EHVKLVLSPE AEPLGNAEDQ NDYKAAVLQS  660
SDFHKCTVVG NAENWPVNSV AIASSNGGTK PKFRPKPEKG AKIKYIPKQR TLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKKQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.76
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892219.10.0uncharacterized protein LOC110810369
TrEMBLA0A067EDL90.0A0A067EDL9_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_107.760.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-171C2H2-like zinc finger protein