PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_103.34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | YABBY | ||||||||
Protein Properties | Length: 131aa MW: 14678.7 Da PI: 9.9976 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 154.3 | 1.1e-47 | 3 | 124 | 36 | 170 |
YABBY 36 tvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvi 116 +vrCGhC++llsvn+ + q+ + ++ + k+++ e + k+ +++++ + s + ++e+pr+pp i evm.model.supercontig_103.34 3 AVRCGHCANLLSVNMGASLQTFPLHDP--QLQKPHVSSE-----YSSKEFGSSSKCGRFS-----AFQPIEHEAPRMPP-I 70 7****************9999999885..2233333333.....3333333333333222.....23467899***999.9 PP YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl evm.model.supercontig_103.34 71 PPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 124 9***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-51 | 3 | 124 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.27E-8 | 68 | 117 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-5 | 73 | 116 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MFAVRCGHCA NLLSVNMGAS LQTFPLHDPQ LQKPHVSSEY SSKEFGSSSK CGRFSAFQPI 60 EHEAPRMPPI PPPEKRQRVP SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI 120 HFGLKLDGNK * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_103.34 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ380710 | 6e-64 | FQ380710.1 Vitis vinifera clone SS0ACG37YP03. | |||
GenBank | FQ384702 | 6e-64 | FQ384702.1 Vitis vinifera clone SS0AAG11YI03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892665.1 | 2e-91 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 1e-56 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A061GUT1 | 2e-72 | A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | evm.model.supercontig_103.34 | 8e-93 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 | Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-39 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_103.34 |
Publications ? help Back to Top | |||
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