PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.105
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 511aa    MW: 56844.9 Da    PI: 8.6771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.105genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016103123323
                                  ETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                  C  Cgk F +   L  H+ +H
  evm.model.supercontig_1.105 103 CRECGKGFQSLKALCGHMASH 123
                                  9*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-4532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.08E-7731No hitNo description
SMARTSM003550.46931IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-5932IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.08E-796123No hitNo description
SMARTSM003550.074101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221101128IPR007087Zinc finger, C2H2
PfamPF139124.7E-6103125IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM003550.19439461IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-8439461IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871439461IPR007087Zinc finger, C2H2
PROSITE patternPS000280441461IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDKNQERKFI CKFCNKRYPC GKSLGGHIRT HMNLNSADAQ AHEFKLSKTK IHPIDNNGSS  60
SSKADSGPEA ASQSGYGLRE NPKKTRRFAD SRNPSVQQHQ LLCRECGKGF QSLKALCGHM  120
ASHSERDKVS NHRFEDQPLT DEKQKLVMDS QSDTETSTPS RRRRSKRMRY YNNNNNNNNR  180
STDVNYSNSV SVANGSSSVS EIEQEQEEVA MCLMMLSRDS SFRKGLNSIA ESSDNNSVVL  240
EAKSSSIDLR ITIKTGLSCT SNAEKFLGMK KGRDGKKLKS AENGFSSPDN SDSGYFRNGP  300
KKVESDVSVD GCLRNAEFRS GFEDLKGKSG KNMSKFKSMT DFGNDRADRG ASTKYALRKS  360
TKKSDSWLEN CEKRNITSNK TSEYWESMYE CGENSLENDP TMAEHANITE SYGGKNPDHD  420
QKLSGNGSKK MGKKKSKGHE CPFCFRVFKS GQALGGHKRS HFVGGHEDNN INNNTVVIKQ  480
DLPDQMPTLI DLNLPAPIDE EEEEEEAIGS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910120.10.0NKAP family protein-like
TrEMBLA0A061E9Y61e-171A0A061E9Y6_THECC; C2H2-like zinc finger protein, putative
STRINGevm.model.supercontig_1.1050.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-99C2H2-like zinc finger protein