PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_230056
Common NameCOCSUDRAFT_68230
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 533aa    MW: 58467.3 Da    PI: 9.8069
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_230056genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.8e-1283129152
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                s+++GV+  k++g+W A+I +       k+++lg f t+e Aa+a+++a+ +
  estExt_Genemark1.C_230056  83 SHFRGVSLLKQTGKWHAQINVG-----GKQVHLGFFATEEAAARAYDRAAIN 129
                                789******************3.....5*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.177148IPR001471AP2/ERF domain
SMARTSM003800.0531054IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-61149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-71648IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1283129IPR016177DNA-binding domain
PfamPF008472.4E-783130IPR001471AP2/ERF domain
PROSITE profilePS5103213.81484143IPR001471AP2/ERF domain
SMARTSM003805.7E-1084149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1084130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MQRMADPLIS AGGKTTSLGD HDTEEEAARA FDRAAINKAG LEAKTNFDAR DYTNEVEDLQ  60
KMSQTELVAM LRSRARKSGT QTSHFRGVSL LKQTGKWHAQ INVGGKQVHL GFFATEEAAA  120
RAYDRAAINK GARDGGKIIT NYSIDDYASE LDLLRRLSQE DLVAALASES RRKQTMEMLA  180
EGFTGKTEEV FGSGFSLAPA PAGPETPMLA ELRAKAERAQ PKPTEKNQLY ASFGRKLEAA  240
PPPTAEQLAA AQERREAAAR HQEELAETRN HRRQAMRLGG QSRTASPARD YVTPIPTPGN  300
SPAKFSRMRA RDGSPEPNLH GEDASPASPF MRQQRSRRSR PSFVANRFLR FEQDESNATT  360
ATLPYMDNMD DEVASHSGAG HFDYGDPEVQ FLQTNKPRTK RQEAMMARRQ KERQQHVQKR  420
RLDILQAAVA ASPGPSPIPT PAQRARRPAF PSPRGLRNGL EAVAAIAEGL CTDPDLAAAP  480
SDMPSTSDSG SHTHDITGHK RGLDLDLDAE ETALPEKKNR RVRQAPTMAK LF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005643035.10.0hypothetical protein COCSUDRAFT_68230
TrEMBLI0YJC20.0I0YJC2_COCSC; Uncharacterized protein
STRINGXP_005643035.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP801966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-13related to AP2.7
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]