PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_90834_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21392.4 Da PI: 9.8597 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.7 | 2.3e-11 | 21 | 61 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ + f kR++g+l K +EL +LC+++++ ii+s+ cra_locus_90834_iso_1_len_678_ver_3 21 FIVNDAKGRAVFKKRKKGLLNKLSELTTLCGINACAIIYSE 61 67788888889****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-11 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.928 | 12 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-15 | 14 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.10E-20 | 15 | 96 | No hit | No description |
Pfam | PF00319 | 3.1E-11 | 22 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
PLSSDPPLIX HPHHRKVKLA FIVNDAKGRA VFKKRKKGLL NKLSELTTLC GINACAIIYS 60 EFDSEPDVWP STLVAQQLIS QFKCLPEMMK GRKMLNQKAY LRERIVKLKE QSNKQLSENH 120 EKDXVELMFK CLLTDKRELD KLTPTDLDDL EGNFEKRMTG INLRLNGDAK KKVVLDGDKA 180 QSNPASPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 36 | KKRKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382260.2 | 1e-47 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | U5GF69 | 5e-47 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s00420.1 | 7e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |