PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_64817_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 208aa MW: 23825.2 Da PI: 4.9403

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_64817_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	152.8	6.3e-48	56	148	3	95
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 ++ r+lPianv+rimk++lP+ ak+sk+aket+qec++efisfvtseasdkc++e+rkt+ngdd++wal++lGf cra_locus_64817_iso_1_len_623_ver_3 56 HDSRLLPIANVGRIMKQILPTSAKVSKEAKETMQECATEFISFVTSEASDKCHKENRKTVNGDDICWALSSLGF 129 6789******************************************************************** PP NF-YB 77 edyveplkvylkkyreleg 95 ++y+e++ yl+k re+e+ cra_locus_64817_iso_1_len_623_ver_3 130 DNYAEAMLRYLQKLREFER 148 ***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-46	52	176	IPR009072	Histone-fold
SuperFamily	SSF47113	1.43E-36	57	162	IPR009072	Histone-fold
Pfam	PF00808	2.6E-26	60	124	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.4E-18	88	106	No hit	No description
PROSITE pattern	PS00685	0	91	107	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.4E-18	107	125	No hit	No description
PRINTS	PR00615	1.4E-18	126	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
RPGDILTYVX TQVRKTHIHV NMYTYIYHSR SLLVIEGNVS ASEKSNIAEM VEEMQHDSRL 60 LPIANVGRIM KQILPTSAKV SKEAKETMQE CATEFISFVT SEASDKCHKE NRKTVNGDDI 120 CWALSSLGFD NYAEAMLRYL QKLREFERLR VINQTKANNF NNIIAQDRVS EEEESETPAP 180 FEFRVLEKGE NSQSHGKPAA LEEEEEEX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-39	54	145	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-39	54	145	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103290.1	3e-70	nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	2e-51	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A068V4A0	4e-65	A0A068V4A0_COFCA; Uncharacterized protein
STRING	cassava4.1_032284m	1e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]