PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4530_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 381aa MW: 41887.8 Da PI: 9.9774

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4530_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.3	2.4e-14	69	156	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekk 70 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k+ cra_locus_4530_iso_9_len_2173_ver_3 69 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIAA 142 7***********************************866677776654449*************9999 PP trihelix 71 rtsessstcpyfdqle 86 + + s++p++++l+ cra_locus_4530_iso_9_len_2173_ver_3 143 G--GYPSKWPFYERLD 156 7..67778****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-26	67	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MEDDEEIQSH PSGCSGSPAT PRSNGRITVT VAAAPPSQGG LTLALPIQQQ QSRPTGNSGG 60 GGGGGREDCW SEGATAVLID AWGERYLELS RGNLKQKHWK DVADIVSSRE DYTKTPKTDI 120 QCKNRIDTVK KKYKLEKAKI AAGGYPSKWP FYERLDQLIG PTAKINSTAG AGASAGAGPS 180 GTVPFSGSQK VPMGIPVGVR SAPQLRQQQQ QQQQQKQKMQ MRKLPSVDSD EESEPDPDSA 240 DDFPPQTYER KRPKIQREPM SMPGLKPSVG RGKDGGRVLG EENQKGGGKE KSWGNSVREL 300 TRAILRFGEA YEQAESSKLQ QLVDMEKQRM KFTKDLELQR MQFFMKTQLE LSQFKQRRVG 360 NSNHHRNSNN ITANNNSDSS S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MEDDEEIQSH PSGCSGSPAT PRSNGRITVT VAAAPPSQGG LTLALPIQQQ QSRPTGNSGG  60
GGGGGREDCW SEGATAVLID AWGERYLELS RGNLKQKHWK DVADIVSSRE DYTKTPKTDI  120
QCKNRIDTVK KKYKLEKAKI AAGGYPSKWP FYERLDQLIG PTAKINSTAG AGASAGAGPS  180
GTVPFSGSQK VPMGIPVGVR SAPQLRQQQQ QQQQQKQKMQ MRKLPSVDSD EESEPDPDSA  240
DDFPPQTYER KRPKIQREPM SMPGLKPSVG RGKDGGRVLG EENQKGGGKE KSWGNSVREL  300
TRAILRFGEA YEQAESSKLQ QLVDMEKQRM KFTKDLELQR MQFFMKTQLE LSQFKQRRVG  360
NSNHHRNSNN ITANNNSDSS S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126280.1	1e-174	trihelix transcription factor ASIL2-like
Refseq	XP_027167962.1	1e-174	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	1e-104	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A068TR21	1e-171	A0A068TR21_COFCA; Uncharacterized protein
STRING	XP_009600232.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10332	18	23