PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4234_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 653aa    MW: 70558.4 Da    PI: 6.6249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4234_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32267324260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  cra_locus_4234_iso_1_len_2373_ver_3 267 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 324
                                          8****************************************.***************85 PP
2WRKY106.11.8e-33462520159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  cra_locus_4234_iso_1_len_2373_ver_3 462 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 520
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-27255325IPR003657WRKY domain
PROSITE profilePS5081122.699261325IPR003657WRKY domain
SuperFamilySSF1182901.44E-24264325IPR003657WRKY domain
SMARTSM007745.0E-34266324IPR003657WRKY domain
PfamPF031064.7E-24267323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37447522IPR003657WRKY domain
SuperFamilySSF1182902.75E-29454522IPR003657WRKY domain
PROSITE profilePS5081138.434457522IPR003657WRKY domain
SMARTSM007744.0E-39462521IPR003657WRKY domain
PfamPF031064.9E-26463519IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MEKSLQNSYE DDEELEASSR RTCSAAEKDL GTRLISASEL NRDGNGATPE EVAAAAASAS  60
SAAIAHHNSV GCAKYKLMSP AKLPISRSPC TLTIPPGLSP TSFLESPVLL SNIKPEPSPT  120
TGSFSLSQLM QGSRDTVALS MVSNCSGVDA SNDPRAASFE FQFHRGPVAA SGPLGSMVSS  180
GINQQHSKQP VPVQDDGIPQ ALANSSLVNC EMSVSRPATM NISTTSATAA MDSDVQNQRG  240
HPNISGQASH SDNKETTSSI TSDRSSDDGY NWRKYGQKLV KGSEFPRSYY KCTYPNCEVK  300
KIFERSPDGQ ITEIVYKGSH DHPKPQPSRR FTPGALMSIQ EEKFDRDSSF TGQEDKSNIN  360
AQNSIIEPNS TPVPSPQEND DGLDAAAAPC ANDEIDEDDP FSKRRNRVLG KIHNFYSLPS  420
KVLQIEVNLS RKLDGAVDIT PVVKPIREPR VVVQTVSEVD ILDDGYRWRK YGQKVVRGNP  480
NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHN VPTARNSSHE MAGPPPPTMS  540
GISRMRPEDN DRISLDLGVG MSYGSTTDSR TNGQLNMLDQ EPIRGQVPPG SAPGRMMVQA  600
SPFSACYGVV NGGSMTLYGS RENLVQNGSG FETAPLQPSN QCQQNLGRVL LGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36267522877Probable WRKY transcription factor 4
2lex_A3e-36267522877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170019.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-153WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A068UZ040.0A0A068UZ04_COFCA; Uncharacterized protein
STRINGXP_009790875.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344