PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4016_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 257aa MW: 28922.4 Da PI: 9.4

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4016_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.6e-50	15	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp e+e yfFs+ k ++g+r+ cra_locus_4016_iso_1_len_1000_ver_3 15 LPPGFRFHPTDEELVVQYLRRKVFSCPLPA-SIIQEVDVCKSDPWDLPGD---LEQERYFFSTXGGKVPNGNRS 84 79**************************.89***********54...46799************ PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl cra_locus_4016_iso_1_len_1000_ver_3 85 NRATGSGYWKATGVDKQIVTSkSHQVVGMKKTLVFYRGKPPNGTRTDWIMHEYRL 139 *************999856777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-58	11	169	IPR003441	NAC domain
PROSITE profile	PS51005	56.524	15	169	IPR003441	NAC domain
Pfam	PF02365	7.0E-27	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEKQLNFVKN GVLRLPPGFR FHPTDEELVV QYLRRKVFSC PLPASIIQEV DVCKSDPWDL 60 PGDLEQERYF FSTXGGKVPN GNRSNRATGS GYWKATGVDK QIVTSKSHQV VGMKKTLVFY 120 RGKPPNGTRT DWIMHEYRLV NVQETVAAAA CPHQHLAQDN WVLCRIFLKR RSGKKDEEMV 180 KSQNCKTKSG EMQGKKSGVV FYDFMAKERT DLNLAPVSSS SGSSGITEVT SNNDSDDHEE 240 SSSCSSFSAS VRRKTWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	13	175	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	13	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	13	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	13	175	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	13	175	18	174	NAC domain-containing protein 19
3swm_B	2e-51	13	175	18	174	NAC domain-containing protein 19
3swm_C	2e-51	13	175	18	174	NAC domain-containing protein 19
3swm_D	2e-51	13	175	18	174	NAC domain-containing protein 19
3swp_A	2e-51	13	175	18	174	NAC domain-containing protein 19
3swp_B	2e-51	13	175	18	174	NAC domain-containing protein 19
3swp_C	2e-51	13	175	18	174	NAC domain-containing protein 19
3swp_D	2e-51	13	175	18	174	NAC domain-containing protein 19
4dul_A	2e-51	13	175	15	171	NAC domain-containing protein 19
4dul_B	2e-51	13	175	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086848.1	1e-129	NAC domain-containing protein 83
Swissprot	Q9FY93	6e-97	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2I4G512	1e-124	A0A2I4G512_JUGRE; NAC domain-containing protein 83-like
STRING	cassava4.1_014491m	1e-124	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]