PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_28505_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | AP2 | ||||||||
Protein Properties | Length: 294aa MW: 32877.4 Da PI: 6.4232 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 174 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g cra_locus_28505_iso_4_len_1413_ver_3 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-9 | 174 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-16 | 174 | 232 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.99E-11 | 175 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-17 | 175 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-32 | 175 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 175 | 231 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLDLNVDAVS VNSACDETFP EEADSVANSY ASSSSAVNAD EIPPTVLNIE ESNSSPAGST 60 NQATTTTLRF SILNNDKIDS GIIQIVDDQD DDDCDDQELL TTRQLFPVRK DDDSFSFAPA 120 AARPHHWLNL AVPEAVRGGV EMGIHNKASP AQAVAQQQQH PVKKSRRGPR SRSSQYRGVT 180 FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF HISDYEDDMQ 240 QMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQLFGKK YVWL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027086811.1 | 9e-99 | ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
TrEMBL | A0A328DAL6 | 1e-102 | A0A328DAL6_9ASTE; Uncharacterized protein | ||||
STRING | XP_009772737.1 | 3e-92 | (Nicotiana sylvestris) |