PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20290_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 358aa    MW: 39278.3 Da    PI: 5.4504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20290_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30178236259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp ++++tY+ eHnh+
  cra_locus_20290_iso_1_len_1796_ver_3 178 SDTWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 236
                                           79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-31166238IPR003657WRKY domain
PROSITE profilePS5081134.911172238IPR003657WRKY domain
SuperFamilySSF1182901.14E-26175238IPR003657WRKY domain
SMARTSM007741.6E-36177237IPR003657WRKY domain
PfamPF031061.2E-25179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADDWDLQAV VRGCATNTTT TTSCSGTTTS TSTASCSTDV YQRLAGTVRS FEQGQPGQGQ  60
GQDGNFIYLQ DLFFEPRNGI QELNDLYKPF FQKTSPPVSP QSNSIPISPL SVLGEFQDLS  120
QLQQNPQGQQ SQRQNIYQPK QTLLRTGASS SHNPSPRSKR RKNQMKRVCQ VPAEALSSDT  180
WSWRKYGQKP IKGSPYPRGY YRCSTSKGCL ARKQVERNRS DPGMFIVTYT AEHNHPMPTH  240
RNTLAGSTRQ KPATVTGNSD DTNKPDSSPM VSSGTSLSPA PEKLELESSS KEEIVEEEDD  300
DINAPEMPMD DDFFEGLEEL AEKSSAGDIF SGHLPPSSQS MQFPWLATNA TTTAAGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-21162239280Disease resistance protein RRS1
5w3x_D1e-21162239280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339631.11e-114PREDICTED: WRKY transcription factor 22
TrEMBLM0ZGA41e-113M0ZGA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002151e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457