PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15701_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 352aa    MW: 40160.6 Da    PI: 9.1928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15701_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1722107799
                                           .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                                    B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                           +  ++ +++l +p kfa++  +  +    ++l+ +sg  W+v++     +++ v+++GWkeFv+++ L+e+D+
  cra_locus_15701_iso_1_len_1125_ver_3  22 TLPSGYHQQLAVPQKFANNLRE--KLAGVVSLKGPSGTLWNVEV---IAGDTLVFKGGWKEFVEDHSLEENDV 89 
                                           446677889********55543..45568***************...566789******************** PP

                                           EEEEE-SSSEE..EEEEE-S CS
                                    B3  80 vvFkldgrsefelvvkvfrk 99 
                                           ++Fk++g+s+f   v +f+k
  cra_locus_15701_iso_1_len_1125_ver_3  90 LIFKYSGESRF--DVLMFDK 107
                                           ******99999..8888876 PP
2B341.72e-13223309188
                                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvka 71 
                                           f+ ++ ps+v k+  +++p + ++++  +k++ +tl++   + r W v++    +++ g+  +t GWk+Fv +
  cra_locus_15701_iso_1_len_1125_ver_3 223 FLVIMQPSHVYKTFYMSIPIDWIKKYLPVKTRMVTLRF---EERNWLVTFHRrfSNNNGG--FTVGWKKFVLD 290
                                           778999********************877767555554...5599999994433666666..799******** PP

                                           HT--TT-EEEEEE-SS..S CS
                                    B3  72 ngLkegDfvvFkldgr..s 88 
                                           n L+e D+++Fk  ++  +
  cra_locus_15701_iso_1_len_1125_ver_3 291 NFLEESDVCLFKPASKtpE 309
                                           ************5543123 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2115110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.04416108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-2117109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1719108IPR003340B3 DNA binding domain
CDDcd100171.54E-1819106No hitNo description
PfamPF023624.4E-1521106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18216319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17218319IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-18222319No hitNo description
PfamPF023628.6E-12223306IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702223321IPR003340B3 DNA binding domain
SMARTSM010191.3E-7223321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
XCRKWEEDIY WSRFQTVQFF QTLPSGYHQQ LAVPQKFANN LREKLAGVVS LKGPSGTLWN  60
VEVIAGDTLV FKGGWKEFVE DHSLEENDVL IFKYSGESRF DVLMFDKESC CEKESSYFVK  120
RCGHTTDVNT GCKNKGTSSE CFEVANESSH GAVDFVPSKR PRSNAAMTSK PTEQCPQADK  180
IQSSGKRTTA YPLQMTSNRR PVTMQEKEKA LQMAHSASSE GSFLVIMQPS HVYKTFYMSI  240
PIDWIKKYLP VKTRMVTLRF EERNWLVTFH RRFSNNNGGF TVGWKKFVLD NFLEESDVCL  300
FKPASKTPEA MVMDVSIFRV VKEVIPPSLV TPLSGRGRNR NLAARMNQKT DN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091227.11e-118B3 domain-containing protein REM16-like isoform X1
RefseqXP_027091228.11e-118B3 domain-containing protein REM16-like isoform X2
RefseqXP_027091229.11e-118B3 domain-containing protein REM16-like isoform X2
RefseqXP_027091230.11e-118B3 domain-containing protein REM16-like isoform X2
RefseqXP_027093952.11e-118B3 domain-containing protein REM16-like isoform X1
RefseqXP_027093953.11e-118B3 domain-containing protein REM16-like isoform X2
RefseqXP_027093954.11e-118B3 domain-containing protein REM16-like isoform X2
RefseqXP_027093955.11e-118B3 domain-containing protein REM16-like isoform X2
TrEMBLA0A068UH601e-113A0A068UH60_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817