PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13116_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 339aa    MW: 36736.6 Da    PI: 7.474
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13116_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12104148347
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                           +WT+eE+  ++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  cra_locus_13116_iso_1_len_1475_ver_3 104 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 148
                                           8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.93997153IPR017930Myb domain
SuperFamilySSF466897.9E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-19100152IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-11101147IPR009057Homeodomain-like
SMARTSM007178.0E-11101151IPR001005SANT/Myb domain
PfamPF002491.1E-10104148IPR001005SANT/Myb domain
CDDcd001672.70E-9104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLTHYSNS SGSGSATPQN  60
GHAAAHDSPG DTPDHPSAAA ADGYASEDFV AGSSSSRERK KGVPWTEEEH RMFLLGLQKL  120
GKGDWRGIAR NYVISRTPTQ VASHAQKYFI RQSNVSRRKR RSSLFDIIPD ESVEAPVVSR  180
DFFAVDPSQA ETQSNNPFPV PSAMDEEVES VESPKSNESE ALPPKPDDSS YSYPVVYPAY  240
VAPFFPVAFP MWSGYNVEPP KQETHEVVKP RAVHSKSPIN VDELVGMSKL SLAESNGDVQ  300
PPSLSLKLVE GSNRQSAFHA NPPSGSSGIN SSHSPIHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080204.10.0transcription factor KUA1
RefseqXP_027182938.10.0transcription factor KUA1
SwissprotQ7XC571e-135MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A068UP160.0A0A068UP16_COFCA; Uncharacterized protein
STRINGXP_006477144.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70622431
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]