PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold32910-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27982.1 Da PI: 4.4416 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33 | 1.4e-10 | 23 | 59 | 7 | 45 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 eE+ +++ +q+ ++ W++Ia +++ gRt++++k++w+ augustus_masked-scaffold32910-abinit-gene-0.0-mRNA-1 23 EEERVVIELQAQFWNK-WARIATYLP-GRTDNDVKNFWN 59 9999************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.7 | 16 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-4 | 16 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 23 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-8 | 23 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-14 | 23 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-9 | 23 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MYVIVYASSS HVVVFDENFD HVEEERVVIE LQAQFWNKWA RIATYLPGRT DNDVKNFWNS 60 RQKRLARILQ ISGTANEPQK NKRAVQTCHD VPASQLNVAK FSSSSEGESS SKAQSASSSC 120 IENYEMIKMV PLTDLLNSNL VYFGKDLAHH ELSQDEKNSC TESQSQIPFS EIPQPKPELT 180 FSPESQELLA KLEDPNIFDM FGTLDACELG NGAQLPIGAQ LFEPVGSCRS DAKENNDNPI 240 TPYSFFDDF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464059 | 2e-46 | AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023927734.1 | 1e-139 | transcription factor DUO1-like | ||||
TrEMBL | A0A2I4HDS4 | 1e-102 | A0A2I4HDS4_JUGRE; transcription factor MYB59 isoform X2 | ||||
STRING | VIT_15s0021g02040.t01 | 3e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3693 | 31 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 2e-27 | MYB family protein |