PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 391aa    MW: 44559.2 Da    PI: 7.0342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.3e-19351131498
                                                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                                                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                                           ++l +pkkf+++ +  k+ ++ +tl+ +sg +W+v+l  +  +++ ++  GW+eFvk
  augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1  35 RQLAIPKKFVDNLK--KKLPQSVTLKGPSGLTWDVEL--KTIDDTLFFNHGWQEFVK 87 
                                                           679*******6655..448889***************..99**************** PP

                                                           HHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                                    B3  71 angLkegDfvvFkldgrsefelvvkvfr 98 
                                                           ++ L+e D +vF+++g s+f   v +f+
  augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1  88 DHSLEETDLLVFRYNGWSQF--DVLIFD 113
                                                           **************977888..888876 PP
2B346.28.1e-15269355392
                                                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEE CS
                                                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgry 59 
                                                            v+ p +v k+  l++p + a++h +   e++++ l+  ++ +W+ ++++++ +g  
  augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1 269 AVMRPTHVYKKFFLYIPLEWAANHLSL--ENQEIYLRY-KNDTWRARYNHNQARGYG 322
                                                           578899***************999444..344799887.789******888888878 PP

                                                           EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                                                    B3  60 vltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                                            +t+GWk+Fv +n+L+e D+++Fk  g+++++ 
  augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1 323 GITSGWKHFVIDNNLEELDVCLFKAAGQMDGST 355
                                                           9***********************988866643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-2321113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.04422115IPR003340B3 DNA binding domain
SMARTSM010195.9E-1325115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-2230113IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1635113IPR003340B3 DNA binding domain
CDDcd100175.09E-2036113No hitNo description
Gene3DG3DSA:2.40.330.108.1E-18265363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-15267363IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-14267365IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998267365IPR003340B3 DNA binding domain
CDDcd100173.26E-17267363No hitNo description
PfamPF023622.7E-13268355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGETCKDWSK WAEDIYWTHF QTIHFSQYLL GDYDRQLAIP KKFVDNLKKK LPQSVTLKGP  60
SGLTWDVELK TIDDTLFFNH GWQEFVKDHS LEETDLLVFR YNGWSQFDVL IFDGKNLCEK  120
GDSYFVRKCG PTEHDNGCLT KKKIREGSID DVHTPLDDGV RCPSPLNYVS DDSATAPSEQ  180
YIISLVGKRT RQSAKSVGRK EPATCGEGMK STASDGKPLN TYDVECSPTI KNGAQGQQYA  240
SNRRLVTEDE IKDALLLAQA ASSDDTYLAV MRPTHVYKKF FLYIPLEWAA NHLSLENQEI  300
YLRYKNDTWR ARYNHNQARG YGGITSGWKH FVIDNNLEEL DVCLFKAAGQ MDGSTILDVS  360
IFRVVQEISP RTLLNPPRKR GRRNSIKSTE A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914222.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2N9ITR90.0A0A2N9ITR9_FAGSY; Uncharacterized protein
STRINGXP_004152721.11e-122(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-77B3 family protein