PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 30390.5 Da PI: 7.7134 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1 100 FSCNYCQRKFYSSQALGGHQNAH 122 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-6 | 96 | 127 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDLPSPSETE TSTIFSVSES TQICLKQKPS LESPKDQQED HQKHQHADSN PDLVLDLSLS 60 SKDSQKELNP ELNLIDSFDA NSSDSPPPPP QGNETEPRVF SCNYCQRKFY SSQALGGHQN 120 AHKRERTLAK RGQKITSLSS SAFGNRYPSS MASLPLHGSF NINRSLGIRV HSRIHKPSYY 180 YQQPISTIGS SSSSSSYLYG QNVWSRQPID QQPAFGRLVQ ENFHAGSATN GVGIARFDSV 240 QGGLWWDSSG ASVAAHLNLK TKQDELQKLD LSLKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924244.1 | 1e-170 | zinc finger protein 1-like | ||||
TrEMBL | A0A2N9IAE7 | 1e-114 | A0A2N9IAE7_FAGSY; Uncharacterized protein | ||||
STRING | VIT_09s0002g09080.t01 | 8e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-44 | zinc-finger protein 1 |