PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 275aa MW: 30390.5 Da PI: 7.7134

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1 100 FSCNYCQRKFYSSQALGGHQNAH 122 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.25E-6	96	127	No hit	No description
PROSITE profile	PS50157	11.427	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDLPSPSETE TSTIFSVSES TQICLKQKPS LESPKDQQED HQKHQHADSN PDLVLDLSLS 60 SKDSQKELNP ELNLIDSFDA NSSDSPPPPP QGNETEPRVF SCNYCQRKFY SSQALGGHQN 120 AHKRERTLAK RGQKITSLSS SAFGNRYPSS MASLPLHGSF NINRSLGIRV HSRIHKPSYY 180 YQQPISTIGS SSSSSSYLYG QNVWSRQPID QQPAFGRLVQ ENFHAGSATN GVGIARFDSV 240 QGGLWWDSSG ASVAAHLNLK TKQDELQKLD LSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924244.1	1e-170	zinc finger protein 1-like
TrEMBL	A0A2N9IAE7	1e-114	A0A2N9IAE7_FAGSY; Uncharacterized protein
STRING	VIT_09s0002g09080.t01	8e-89	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-44	zinc-finger protein 1