PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08631-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 347aa    MW: 38936.9 Da    PI: 6.4084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08631-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09178225455
                                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  augustus_masked-scaffold08631-abinit-gene-0.0-mRNA-1 178 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 225
                                                           8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.15E-10172229No hitNo description
SuperFamilySSF474594.97E-17172241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.739174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16174239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6178225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAAFSYLHNN SFILDSNFLS TNTKMSSFGE DENLNTNGFS QFYPPELVQE IPVDVTIHES  60
SCLEHSSKVA FSDNEPSVTK KQSTDSSIVV DKLDSGEQVT QKVTPMEKKR KSRNKASSLT  120
QSKNLTEEIM KKQRKCNGTL KEEGKKSKAE KKDQEKVAEE PPTGYIHVRA RRGQATDSHS  180
LAERVRREKI SERMKILQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASVNP  240
MFYDFGMDLD GLMLRPEGLS SMVSTLPSMT ECSPTQPTGF AELTTTTAFT TANNYPIVDN  300
SGSTLFQHGQ RPNALSEDIA SVFCDVEDQR QKFLNPSGFF NNFCFFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408784e-87EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908024.10.0transcription factor bHLH137
RefseqXP_023908025.10.0transcription factor bHLH137
TrEMBLA0A2I4FLK31e-177A0A2I4FLK3_JUGRE; transcription factor bHLH137-like isoform X1
STRINGcassava4.1_023959m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-60bHLH family protein