PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 393aa MW: 43469.6 Da PI: 8.5492 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.6e-05 | 156 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ + L++H+ t H augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1 156 FPCTACGEIFPKPQFLEQHQATkH 179 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.515 | 156 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 179 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 5.28E-14 | 181 | 392 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.9E-5 | 192 | 298 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 1.7E-5 | 328 | 392 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MASVVTFVNN FFSIFILLLL HLGCFIFTTT ADDHHQRPYS KKRKVSPLSV SHSSPSKPKK 60 ALSSSWSFVK RIFSSNSCKS NISSITQTQP TTTPPTPITT TTTLSSARSS QHSIVPLIIQ 120 PETHLSDPPR KKKSGSCSES DISADNPFFP LRNDIFPCTA CGEIFPKPQF LEQHQATKHA 180 VSELVDGDSG KNIVRIIFKT GWTDNHKSPV LHRILKIHNS PKILSRFEEY RETVKAKAAR 240 NGAVKRRDER CIADGNELLR FHCSTFLCDL GLNGNSGICN QQYCSVCGIV KSGFSPKLDG 300 ISTLSTSWKA HVAIPEEIEQ EFSFMNVKRA MLVCRVVAGR VGCDSEEVDK EDGGFDSVFG 360 RSGNGVHTSV DEEELLVFNP RAVLPCFVIV YTV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 43 | QRPYSKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881281.1 | 0.0 | uncharacterized protein LOC111993690 | ||||
Refseq | XP_023894810.1 | 0.0 | uncharacterized protein LOC112006729 | ||||
TrEMBL | B9GIT8 | 0.0 | B9GIT8_POPTR; C2H2 family protein | ||||
STRING | POPTR_0001s25700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-117 | C2H2 family protein |