PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06547-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 589aa    MW: 65487.4 Da    PI: 7.7497
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06547-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-085085461854
                                                           HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                              Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                           +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  augustus_masked-scaffold06547-abinit-gene-0.3-mRNA-1 508 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 546
                                                           5887779******************************88 PP
2BELL80.81.9e-26380449272
                                                  BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiS 58 
                                                           r+++++kk++Ll+ll+ Vd+rY+q++++++tvis+F+a+++l++ ++++++A ++iS
  augustus_masked-scaffold06547-abinit-gene-0.3-mRNA-1 380 RRAIEAKKTQLLNLLQLVDERYNQCMDEVHTVISAFHAATELDP-QIHARFAIQTIS 435
                                                           7899****************************************.************ PP

                                                  BELL  59 rhFrcLkdaiaeqi 72 
                                                           + +++L+++i+++i
  augustus_masked-scaffold06547-abinit-gene-0.3-mRNA-1 436 FLYKNLRERISNHI 449
                                                           ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-26301447IPR006563POX domain
PfamPF075263.0E-27307446IPR006563POX domain
PROSITE profilePS5007111.029487550IPR001356Homeobox domain
CDDcd000868.67E-11490551No hitNo description
SMARTSM003896.9E-6490554IPR001356Homeobox domain
SuperFamilySSF466892.78E-15492559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-26493556IPR009057Homeodomain-like
PfamPF059209.5E-15507546IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MENDLFRVPI DMSSQSSVYI SGFQQHTTPN SLVQSDSFDL NRENHIMSGF PVLSELQGGA  60
INGLHPTLHT TNGLGIVDSN ALVSLLGRNV VRESSLSSSR LTSNTEFHEQ LAGGNSISAA  120
SLATFLSTRS GLQDNLNNLA MPTPSICPLE FLGTYASNGC SNGLNSSFTT SVNCGYDEVL  180
GQTNTKYSAP LELGGKFQVR TVLQPYSSTG NPGANGCMSS SSGNPTANRP YSSTNFNNEL  240
SLTLATSEPS VLSGINIPDR CSEMGVSGVT RHCLNEKRLS SEQTSCNSKE LSVSFGSYKP  300
TRFSQAILGS RYLRVIQEIL VQIANYSLEN LDHMSYSNGR NGACSNMPFS SNCSAERWMS  360
STVPDVDGGF EPEMESTLRR RAIEAKKTQL LNLLQLVDER YNQCMDEVHT VISAFHAATE  420
LDPQIHARFA IQTISFLYKN LRERISNHIL AMGAHFSSPC TKEKERSFET SFIQKQWALQ  480
QVKSKDHQLW RPQRGLPERS VSVLRAWMFQ NFLHPYPKDA EKHLLAVKSG LTRSQVSNWF  540
INARVRLWKP MIEEMYAEMN RRKARRDDEA SQSDQRSHIS INNPRLNMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-14496554563Homeobox protein Meis2
4xrm_B1e-14496554563Homeobox protein Meis2
4xrs_A9e-15496553158Homeobox protein Meis1
4xrs_B9e-15496553158Homeobox protein Meis1
5bng_A1e-14496554159Homeobox protein Meis2
5bng_B1e-14496554159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889479.10.0homeobox protein ATH1 isoform X1
SwissprotP487311e-117ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2I4HSQ20.0A0A2I4HSQ2_JUGRE; homeobox protein ATH1-like
STRINGVIT_04s0008g00880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-119homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]