PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05207-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 506aa    MW: 55262 Da    PI: 6.7929
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05207-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17166215155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  augustus_masked-scaffold05207-abinit-gene-0.0-mRNA-1 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                                                           78*******************......55************************997 PP
2AP241.14.4e-13258308155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  augustus_masked-scaffold05207-abinit-gene-0.0-mRNA-1 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 308
                                                           89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-9166215IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16166224IPR016177DNA-binding domain
CDDcd000182.82E-11167225No hitNo description
PROSITE profilePS5103217.596167223IPR001471AP2/ERF domain
SMARTSM003805.9E-32167229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17167224IPR001471AP2/ERF domain
PfamPF008471.3E-8258308IPR001471AP2/ERF domain
CDDcd000182.97E-25258318No hitNo description
SuperFamilySSF541718.5E-17258317IPR016177DNA-binding domain
PROSITE profilePS5103215.527259316IPR001471AP2/ERF domain
SMARTSM003802.5E-32259322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15259316IPR001471AP2/ERF domain
PRINTSPR003675.6E-6260271IPR001471AP2/ERF domain
PRINTSPR003675.6E-6298318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MLDLNLNVAS AESTQEYDSA AFFEKFPEGA SANQMDESGT SNSSVVNADA CDDESCSTRA  60
AGDVHTFNFD ILKVGGGGGA EDDVVNVTTK ELFPVSTRGG PNGGDLMNWQ GQSSSSSSSK  120
KSWIDLSFDQ SGAEVRAVQL QQQPPQPPPQ QPPVKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFNLSDYEDD LKQMKNLTKE  240
EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD  300
KAAIKCNGRE AVTNFEPSTY EGEMISDASN EGGNHNLDLN LGISPPSLGN GSKENEGCLQ  360
FHSDSYNMQN GRGSRMENHA HATLSNSPFK GLVMTSERPP IWNGVYPNFI PNEERATEKR  420
IALGSSHGLP NWAWQMHGQV SATPMPLFST AASSGFSFSA TPPSAAILPS KPLNSTAHNI  480
FLSSSATAAA NTSQYYYQMK PSQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881883.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-128RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2N9IT540.0A0A2N9IT54_FAGSY; Uncharacterized protein
STRINGXP_010112330.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-136related to AP2.7