PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03908-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 301aa    MW: 33103.4 Da    PI: 8.2173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03908-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181257147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                          +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  augustus_masked-scaffold03908-abinit-gene-0.7-mRNA-1 12 KGPWSPEEDEALQRLVQSYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                                                          79******************************.***********985 PP
2Myb_DNA-binding54.33e-1766108347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           ++T++Ed+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  augustus_masked-scaffold03908-abinit-gene-0.7-mRNA-1  66 PFTPDEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                                                           89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.545762IPR017930Myb domain
SuperFamilySSF466892.58E-329105IPR009057Homeodomain-like
SMARTSM007175.2E-171160IPR001005SANT/Myb domain
PfamPF002492.5E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-261365IPR009057Homeodomain-like
CDDcd001671.98E-161456No hitNo description
SMARTSM007171.5E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.764113IPR017930Myb domain
CDDcd001677.25E-1266109No hitNo description
PfamPF002495.3E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASTKKDLDR IKGPWSPEED EALQRLVQSY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFTPD EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMGDDF  120
NDDVSNPQPL KRSASVGAGT VTGTGLYLNP SSPSGSDLSD SSLPATSPSH VFRPVARAVS  180
LVPSHPVETS CSTTTDPPTS LSLSLPGSDP FELISPAQMV PPLPPQQQQL PPPPPPPPPE  240
QPVTGYEKQF FSNEFLTVMQ EMIRKEVRNY MSGIEQNGLC NLQTDAIRNA VIKRIGISKI  300
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-41111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-41111133105C-Myb DNA-Binding Domain
1msf_C1e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910544.10.0transcription factor MYB44-like
SwissprotO231601e-100MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KZQ61e-152A0A067KZQ6_JATCU; MYB family protein
STRINGPOPTR_0002s12410.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]