PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 25812.4 Da PI: 8.2216 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G ++W+ I+r++ gR++k+c++rw + augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1 34 KGPWSAEEDRILTRLVERYGARNWSVISRYIK-GRSGKSCRLRWCNQ 79 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 88 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1 88 PFSPAEDETILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 130 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.253 | 29 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-31 | 31 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 33 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 34 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 35 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-14 | 36 | 78 | No hit | No description |
SMART | SM00717 | 1.3E-15 | 85 | 133 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.318 | 86 | 135 | IPR017930 | Myb domain |
CDD | cd00167 | 6.23E-12 | 88 | 131 | No hit | No description |
Pfam | PF00249 | 1.1E-14 | 88 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 88 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEASSTTSSS DASSSDSSLS SKTPRNHNRP EKIKGPWSAE EDRILTRLVE RYGARNWSVI 60 SRYIKGRSGK SCRLRWCNQL SPNVEHRPFS PAEDETILAA HAQYGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVKDQQM IEGGGCCIST NSLINNEGFA SGSLQCNNGF DEDEQFTALT 180 LAPPGIGGGG GGNGGVAERR SESFPTGFWD VMRDVIAREV RDYVSSTLSE NSGFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-41 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-41 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023910903.1 | 1e-171 | transcription factor MYB73-like | ||||
Swissprot | Q9SN12 | 6e-56 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2N9HRH7 | 1e-114 | A0A2N9HRH7_FAGSY; Uncharacterized protein | ||||
STRING | EMJ25026 | 1e-100 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 8e-58 | myb domain protein 77 |
Publications ? help Back to Top | |||
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