PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00906-abinit-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 567aa MW: 64104.1 Da PI: 4.5519 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 15 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeek 56 ppGfrFhPtdeelv +yLk+++ ++kl+l ++i+evd+yk++P++Lp + +k++++ augustus_masked-scaffold00906-abinit-gene-0.7-mRNA-1 15 PPGFRFHPTDEELVLYYLKRRICRRKLKL-DIIAEVDVYKWDPEELPgQsILKSGDR 70 8****************************.99**************96446788999 PP NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113 +w++F++rd+ky++g r+nrat++gyWkatgkd+++++ ++++vg+kktLvfy+gra augustus_masked-scaffold00906-abinit-gene-0.7-mRNA-1 71 QWFYFTPRDRKYPNGGRSNRATRHGYWKATGKDRNITC-NSRTVGVKKTLVFYRGRA 126 **************************************.999*************** PP NAM 114 pkgektdWvmheyrl 128 p+ge+tdWvmhey+l augustus_masked-scaffold00906-abinit-gene-0.7-mRNA-1 127 PHGERTDWVMHEYTL 141 *************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-59 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-27 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MTVQSESCMG DDGWPPGFRF HPTDEELVLY YLKRRICRRK LKLDIIAEVD VYKWDPEELP 60 GQSILKSGDR QWFYFTPRDR KYPNGGRSNR ATRHGYWKAT GKDRNITCNS RTVGVKKTLV 120 FYRGRAPHGE RTDWVMHEYT LDEEELKRCQ NVQDYYALYK LYKKSGPGPK NGEQYGAPFK 180 EEEWDDVDCP DFNNSVDRDI SVKQLDEVTS LTTVRVNGQV FDGFEEFMRQ IADDPVLEQP 240 QLGDCAFILS QVVGEEETQS TMVDPTSTEV MNAAPVEVLH PSGQLYDVQA SFGLTQSATS 300 QLQLYESPEV LSAPNLHGHE PFIIHEEDFL EIDDLIGPEP SFSNDRAVEN LQFENRNGDG 360 LSEFELFHDA ALFLHDMGPI DQATVADPYI NTLENNTVTQ FDYQLQPNLD GAGQNIDQLW 420 ALDERRNLYT SAESDLGHFP TLPSGVTNES TNYHTQANQN ENGNEDVGAA SRFSSALWSF 480 VESIPTTPAS ASENALVNRA FERMSSFSRV RMNIKNTNVS VGNGAESNKR RAGRSKGFIF 540 ISVIGVLCAI LWVLIGNVRL WGRCMST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 15 | 141 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922687.1 | 0.0 | NAC domain-containing protein 17-like | ||||
TrEMBL | A0A2N9H1E9 | 0.0 | A0A2N9H1E9_FAGSY; Uncharacterized protein | ||||
STRING | XP_008237396.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-145 | NAC domain containing protein 17 |