PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00577-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27366.7 Da PI: 6.3178 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 13 | 59 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + W +eEd++l+++v+ +G g+W+t++++ g+ R +k+c++rw +yl augustus_masked-scaffold00577-abinit-gene-0.2-mRNA-1 13 NLWKPEEDLILKNYVETHGEGNWATVSERSGLMRGGKSCRLRWKNYL 59 56*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l augustus_masked-scaffold00577-abinit-gene-0.2-mRNA-1 65 RGEMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.988 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-28 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-14 | 13 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-9 | 15 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.366 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-17 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-24 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.91E-12 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MESTRVKPQL KKNLWKPEED LILKNYVETH GEGNWATVSE RSGLMRGGKS CRLRWKNYLR 60 PNIKRGEMSK EEEDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKKCLLGKRK 120 ETNSNHHEEE DNDESMNKKN KLGPPFHSEP HGSTHISLTS SAKLGLEEGS RKEESTVTEG 180 NWVGYDTSSF NCDIMDYPIM PEAAGGGAGN SASFVFDDEP LIAYMDSFVL FEAFGCGGGE 240 EL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 8 | 114 | 3 | 108 | B-MYB |
1h8a_C | 8e-23 | 8 | 114 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876096.1 | 1e-148 | transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 1e-62 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A2N9GXQ7 | 1e-121 | A0A2N9GXQ7_FAGSY; Uncharacterized protein | ||||
STRING | XP_010112475.1 | 1e-96 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-64 | myb domain protein 82 |