PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00490-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 345aa    MW: 39135.2 Da    PI: 7.2738
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00490-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.91.7e-1161101441
                                                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                                                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                                                           +k++rr+++NReAAr+sR+RKka++++Le+   k ++Le+e
  augustus_masked-scaffold00490-abinit-gene-0.8-mRNA-1  61 DKVQRRLAQNREAARKSRLRKKAYVQQLETsrlKLAQLEQE 101
                                                           89***************************833344444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-854107No hitNo description
SMARTSM003387.3E-958139IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.04860104IPR004827Basic-leucine zipper domain
PfamPF001702.6E-861100IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-662102No hitNo description
PROSITE patternPS0003606580IPR004827Basic-leucine zipper domain
PfamPF141444.6E-29147222IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGIYEPFQQV SMWGDTFKGD SIPNASTILQ VDARLENKTE FISHDSMGPS GNEQEANKPG  60
DKVQRRLAQN REAARKSRLR KKAYVQQLET SRLKLAQLEQ ELERARKQGV YICPPDTGHV  120
GFSANVNSGI AAFEMEYAHW VEEQNRQICE LRNALQAHIT DVELNILVEN GYSHYYNLFR  180
MKADAAKADV FYLISGVWRT SAERFFHWIG GFRPSELLNV LMPQLEPLTD TQIQSVSNLK  240
RSSQQAEDAL SQGMDKLQQS LAQNIGAEAV NTSNYGSQMI AAMEKLEALE GFVNQADHLR  300
QQTLQQMFRI LTIRQSARGL LGLGEYFHRL RALSSLWSAR PREPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911614.10.0transcription factor TGA7
RefseqXP_023911615.10.0transcription factor TGA7
SwissprotQ93ZE21e-161TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A2N9G7990.0A0A2N9G799_FAGSY; Uncharacterized protein
STRINGEOY161250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-164bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]