PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00481-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 738aa    MW: 79984.5 Da    PI: 6.2381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00481-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07314334526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                           +C++f++ G C++Gd C +aHg
  augustus_masked-scaffold00481-abinit-gene-0.5-mRNA-1 314 PCPDFRK-GACRRGDMCEYAHG 334
                                                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.24E-1636170IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-1841190IPR020683Ankyrin repeat-containing domain
SMARTSM0024820004373IPR002110Ankyrin repeat
PfamPF127961.2E-986159IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.74190170IPR020683Ankyrin repeat-containing domain
CDDcd002048.69E-1490170No hitNo description
SMARTSM002480.1690120IPR002110Ankyrin repeat
PROSITE profilePS5008811.728125160IPR002110Ankyrin repeat
SMARTSM002485.6E-4125157IPR002110Ankyrin repeat
SMARTSM003564.0E-6309335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4313336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582314336IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5314334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4342372IPR000571Zinc finger, CCCH-type
SMARTSM0035635344367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MCSGPERSKS SASSASTTSP SVSTVETTSN NKDMNNLTVQ TEDSFSNLLD LAANNDVEGF  60
KQCIERDASS IDEVGLWYVR QRGSKQVVPE KRTPLMVAAT FGSVDVLEFI LVHSEADVNF  120
SCGQDKTTAL HCAASGGSLN AVDVVKLLLL AGADPNCTDA SGLRPIDVVV NVVPPKLQGM  180
RVALEELLSH NASDGSVGER HLRVSISSSG SDSPTLSSSP EHGLPSPSEF VSSPLKYNDA  240
PIHFALEKKE YPVDPSLPDI KNIIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA  300
RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV  360
CFFAHTAEEL RPLYVSTGSA VPSPRSSASA ASVMDMAAAM NLLPGSPSSI SAMSPSPFAQ  420
PMSPSANNGI SHSSMGWPQP NVPTLNLPGS NLQSSRLRSS LSARDIPPED YNLLSDFDAQ  480
QQLLSDLNCF SQSRSNSISV NRSGRSKTLT PSNLEELFSS EVSMSPRYSD AAAAAVFSPT  540
HKSVLLNQYQ QQQSMLSPIN TNVFSPKSVE HHLLQASFGV PSPGRMSPRS VEPISPMGSR  600
LSALAQREKQ HQQLRSLSSR DLGTNNPATI VGSPVNSWGK WGSPNGKLDW LANGDEVGQL  660
RRSSSFELSN NGEEPDLSWV QSLVKESPPE MMKEKLAVPV SGAAASGEGL NSNSQIESVD  720
HSVLGAWLEQ MQLDQLVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927363.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2N9I0V70.0A0A2N9I0V7_FAGSY; Uncharacterized protein
STRINGEOX966900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]