PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00457-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 177aa    MW: 19461.5 Da    PI: 5.076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00457-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-171565155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ tae Aa a++ a  +l++
  augustus_masked-scaffold00457-abinit-gene-0.0-mRNA-1 15 KKYKGVRQRK-WGKWVSEIRVP---G-TqERLWLGSYSTAEAAAMARDVAFYCLHK 65
                                                          59*******9.**********8...3.35*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-241575No hitNo description
PfamPF008474.2E-91660IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-251676IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-171675IPR016177DNA-binding domain
PROSITE profilePS5103220.7841675IPR001471AP2/ERF domain
SMARTSM003802.5E-251681IPR001471AP2/ERF domain
PRINTSPR003672.8E-91728IPR001471AP2/ERF domain
PRINTSPR003672.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSCSLEENGA CTSQKKYKGV RQRKWGKWVS EIRVPGTQER LWLGSYSTAE AAAMARDVAF  60
YCLHKPSTLE KLNFPSMLPS CSLRTDLSPR SVQKAASDAG MAIDAQLITD RLPESNEREV  120
FDHGHGHSGG GGGGEGHGLE AGFWENGGDN NYHGMTSWQG TEFKEEEDLS ISIEDYL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894640.11e-100ethylene-responsive transcription factor ERF020-like
SwissprotO805421e-45ERF19_ARATH; Ethylene-responsive transcription factor ERF019
SwissprotQ9C9I89e-46ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2N9J3532e-87A0A2N9J353_FAGSY; Uncharacterized protein
STRINGXP_008219092.11e-58(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-47ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]