PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc07635.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 24837.4 Da PI: 7.4554 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 17 | 38 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Zpz_sc07635.1.g00010.1.am.mk 17 TCKLCSRRFASPRALAGHMRSH 38 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0078 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 16 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.85E-7 | 17 | 38 | No hit | No description |
Pfam | PF13912 | 8.1E-5 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.85E-7 | 205 | 229 | No hit | No description |
SMART | SM00355 | 55 | 210 | 230 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.6E-10 | 210 | 234 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
PRALPEGLSS LAMAKNTCKL CSRRFASPRA LAGHMRSHSL AASAAAAAAA AAEAAAAKQQ 60 ISSASSASTS FTTADDEDVG FKKPASIHAL RENPKRSLRA ADGSSFSSDR ESEAESTQPP 120 AKRASPPAAW GEADPVSSLS EAATPEEDVA LSLMKLSRDS WPSASRVEEA DYAEDDDSDD 180 DGYVAPPAPT PPRRLAAPAP APVAEKRTQF QCTACKKVFR SYQALGGHRA SNVRGGRGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc07635.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020393363.1 | 5e-78 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A1D6HF46 | 1e-76 | A0A1D6HF46_MAIZE; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A3L6EMC6 | 1e-76 | A0A3L6EMC6_MAIZE; Zinc finger protein ZAT1 | ||||
STRING | Pavir.Ab02618.1.p | 2e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-12 | C2H2-like zinc finger protein |