PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05589.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 521aa    MW: 55587 Da    PI: 6.2012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05589.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.3e-29246303359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+++dp ++++tY+geH h+
  Zpz_sc05589.1.g00010.1.am.mk 246 DLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCRDDPGTLIVTYTGEHSHP 303
                                   99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30235305IPR003657WRKY domain
PROSITE profilePS5081131.272239305IPR003657WRKY domain
SuperFamilySSF1182904.05E-26242305IPR003657WRKY domain
SMARTSM007741.2E-35244304IPR003657WRKY domain
PfamPF031061.2E-24246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MENWATSAWP AWPVVSRDIY YSLIPRSTNA KRSPAFRAFL SRIHRPAGPH RNPLPLPPPQ  60
PRRQKQLRLA SLRWKSSRSQ RLLPALLSVR PYSERRELEG PAGEMEGDLG WCRGGGSSSN  120
NWDLHAVVRF ACGDAAPSSS VPPSDDADDA FPWPGPLQPL LTDPAVDGLC QALLAAPKQE  180
AAPLSSPRNE APATTQQPAP PAEEAPAKPL ASGRGGGRPT RSKRKSKKSQ VNKEVTRVAA  240
GAPSPDLWAW RKYGQKPIKG SPYPRGYYRC STDKDCKARK QVERCRDDPG TLIVTYTGEH  300
SHPVPLHRNS LAGTTRSKPQ QQPSAASPTA EETQQQGTPS ACTGLSPSTP LRSSSVGVEY  360
EDEEDDDTLT VRLLLEDTEM AAEDDALLFF QPDEPAPPGV PGSGVGCDDV MLLPKPEEPA  420
PMSGNGSGVC DDAMLFHNNK PDEPAGPPGT VSSGGGAEDV NMLFPKPSEP QGPQRTMVSA  480
GIANVDAGTA SVINFVDEKF SVSGLSAWEA AATAAPSGWG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-172463051879Disease resistance protein RRS1
5w3x_D8e-172463051879Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865PQPRRQKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05589.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686097e-70BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.11e-113WRKY transcription factor 22-like
TrEMBLA0A1E5VAE71e-115A0A1E5VAE7_9POAL; WRKY transcription factor 22
STRINGPavir.Da00956.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-43WRKY family protein