PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05105.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 802aa    MW: 87442.7 Da    PI: 8.5357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05105.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.2e-09170192326
                                     S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                     t  C +fa+ G C++G++C+FaH+
  Zpz_sc05105.1.g00010.1.sm.mkhc 170 TDQCYNFAK-GRCNRGASCRFAHD 192
                                     678******.*************7 PP
2zf-CCCH22.42.2e-07231250525
                                     --SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                     +C+ffa+ G+C++G++C++ H
  Zpz_sc05105.1.g00010.1.sm.mkhc 231 PCKFFAA-GHCRRGANCPYLH 250
                                     8**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.46167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5167194IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6170192IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033170193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6170193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201226253IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5226252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7227251IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5230250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4231252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
RPPPKRHHPP PRAAGPPLPA SSSPPRAGVT ISQLVQTSVT RTGDSAGRTA LRLAAARSQS  60
ISKRCLGQIT QEQKSFQKQK QKQEQEQKQR ARQEQKPKRG LNCRFPHEDG GHKPFEEHYP  120
AGPKERYGYK SKEFMDSREQ DDFLQSRHSR GRFDDEAWER SEPQREYRST DQCYNFAKGR  180
CNRGASCRFA HDDSAPQGGW RDEARQNAYD RLGPDPSYGN RIEPRRVNKN PCKFFAAGHC  240
RRGANCPYLH EEAPQSQIGL SAPDEPSNYN DGATGRGNFS SWDEQNNSVL ATSQIVSRDD  300
RENPVSQSIG RTGSRYEYEN RHPKDAGKSQ YQITPPEDFG SQVHKSDVAA SQQTQLLTPV  360
QHSADSMNND KVSGTDGHNA PGTAGNLSMH SGMHASNVAE DLGRILQSQD AISQIHGPPS  420
LPVTAHLQNN TSSLPSNSHM QQSSFSVHPQ DQFLGTQAAA NNSTHSVQGH PVGPHTGHGQ  480
LGYGLGLEAL PDLSAHNLHN FSVAGQVPQD LPIGVHTGQP QAAIDLPRLG QDSGAQAQSI  540
QTMQHFQTIA PHVPASSSAD MAGASVPHNA AKSEDIHRVT ASLAQYFGNA GAVGLQSSEP  600
NMNSNLMVTS SAVPPAVQPN PWPWAQQHAG MVQPALAVPP EQHQHAPQTS QMPVAVGSST  660
GNSMPLPHSG PSTIQAAASV INDAMPSEKK KGETKHTDAE ANEDRENKKS KDSKALKMFK  720
IALADFVKEA LKPTWKEGQL SREVYKTIVK KVIDKVTSTV ENTPPTKEKI DIYMAFSKDK  780
LNKLVQVTCL SLLHNSFISC VQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05105.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820462.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_025820463.10.0zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A2S3HZY10.0A0A2S3HZY1_9POAL; Uncharacterized protein
STRINGPavir.J39457.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-07C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]