PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04833.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 606aa    MW: 65395.7 Da    PI: 8.4043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04833.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13197247255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc04833.1.g00010.1.am.mk 197 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 247
                                   789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.14E-14193251No hitNo description
PROSITE profilePS5088815.555195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17195268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
VRLECRNFTV TPFETGPQKE AKTPTLFANI LSYTNFLAIF RHAGKVFKTS VRALGSYLEP  60
AHFSVHCTLF HFILPRPSSM GDGGLCELLV DGRCDQLRHV SDAEDLFSIL ETWEECVKGG  120
LGGPRGSAAV FNSQVDCTGG GSSVADAGAA RPTSTTMGNS RRRSVVDEAK GGSAPVQKKQ  180
KGTVAEPAPD DDDGAAKMSH IAVERNRRKQ MNEHLAVLRS LMPCFYVKRG DQASIIGGVV  240
DYIKELQQVL RSLEAKKHRK ACADQVLSPR PGTAAASPRA LLDMSSMPQI SRRVAVPISP  300
RTPTRPGSPY YVPGCGGRPP HPAAAYMMAT STQATTPTGS SSSCSSSHDQ QQQHYSPYLP  360
TLDSIVTELA VHASAASRPI LPDVKVEFAG PNLVLKTVSR RAPGQALKII AALESLSLEI  420
LHVSVSTVED TMVHSFTIKI GVECELSAEE LVQEIQRTFW AVHLAIDAPP IFTKNFDALR  480
VSPSRHPHHS LSAPPPNPDP AALPGRRPLS HRLRLWCPYP EEPSWPLPRS LPPSLDPCLV  540
AAKCSPLPRC LHLYCPHPEE DHPPPTAGSS MLPSPTPDRR GPAPQLTAIT GRSLASYVTS  600
HCLPPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04833.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615851e-80BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268671e-80KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-150transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-151A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Aa02723.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-67bHLH family protein