PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03988.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 399aa MW: 41862.8 Da PI: 6.9676

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03988.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	2.9e-13	115	164	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zpz_sc03988.1.g00040.1.sm.mk 115 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 164 68***********************9...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.513	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-13	115	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-17	115	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.01E-14	115	168	No hit	No description
SMART	SM00353	4.9E-12	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MAEALCDQLF ADDVLDGELH HRPSDAEDLF GILEAWEDCV SGGSSVNTPR GGGGVDARGG 60 KRRPPQGGCD VDSRDPDDGS SMVVQEPAKR QRCSPAPVAV VSTAGEGGAG KATATSHIAV 120 ERNRRKQMNE HLAVLRSLMP CFYVKRGDQA SIIGGVVNYI KELQQLLQSL EAKKQRKAYA 180 DQVLSPRPPP ACCSPRPPLS PRPPLPFKST PPMSPRPAVP ISPRTPLTTP SSPYNKLICR 240 QPSLSLPLPL PLPLPLPLPP APGSAYASPA MTPTTSQESA ASASSYLPSL DAIAAELCAY 300 AANGKQQATA PAGGGGVVVL PEVKVEFSGA NLVVKTVSQR APGQAVKVIA ALEGRSLEIL 360 HAKISAVDDT AVNSFTIKIG IECDLSAEEL VQEIQQAFS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MAEALCDQLF ADDVLDGELH HRPSDAEDLF GILEAWEDCV SGGSSVNTPR GGGGVDARGG  60
KRRPPQGGCD VDSRDPDDGS SMVVQEPAKR QRCSPAPVAV VSTAGEGGAG KATATSHIAV  120
ERNRRKQMNE HLAVLRSLMP CFYVKRGDQA SIIGGVVNYI KELQQLLQSL EAKKQRKAYA  180
DQVLSPRPPP ACCSPRPPLS PRPPLPFKST PPMSPRPAVP ISPRTPLTTP SSPYNKLICR  240
QPSLSLPLPL PLPLPLPLPP APGSAYASPA MTPTTSQESA ASASSYLPSL DAIAAELCAY  300
AANGKQQATA PAGGGGVVVL PEVKVEFSGA NLVVKTVSQR APGQAVKVIA ALEGRSLEIL  360
HAKISAVDDT AVNSFTIKIG IECDLSAEEL VQEIQQAFS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03988.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437061.1	1e-154	transcription factor SPEECHLESS
TrEMBL	A0A1E5UP88	1e-155	A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRING	Pavir.Db01402.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-34	bHLH family protein