PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03057.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 453aa MW: 48426.8 Da PI: 11.0798

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03057.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.8	2.2e-21	196	285	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry++++ ++ +r+++ Zpz_sc03057.1.g00010.1.am.mk 196 CWTHEETLALIEAYRDRWEMLRKGNLRAADWDDVADAVtsrcgrFPTATPKTGVQCRHKIEKLRKRYRAERGRSAGRSKG- 275 8***********************************998888888899*********************98443. PP trihelix 76 sstcpyfdqle 86 ++p+++ l+ Zpz_sc03057.1.g00010.1.am.mk 276 -PKWPFYQLLH 285 .47**9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-21	195	286	No hit	No description
PROSITE profile	PS50090	6.017	197	259	IPR017877	Myb-like domain
SMART	SM00595	1.4E-5	204	292	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
LLPPAAGFPI RRKKSGRGRP RPTGEKARRG GHHHPPRPDT ALGHRGTDSA QCGAASSSSL 60 PSAAALRLHD KPLGGTTAPL RPPPHAAAQR WCRSPAGHFT ARPTPAAHHR TAPPLPPPPP 120 PYYDRFRSSS VPHLHHQTLD AFAAADRPSR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG 180 GGGLGGGSGR RLPPPCWTHE ETLALIEAYR DRWEMLRKGN LRAADWDDVA DAVTSRCGRF 240 PTATPKTGVQ CRHKIEKLRK RYRAERGRSA GRSKGPKWPF YQLLHDLAGN GAPDPSPNAI 300 VKIKTKGPAP PASPPSPVSS PSSEEEAVRS RSLHGLISNG GAGSGLRFTI PKASRTRPSS 360 AAATRPDKSS NQGDTESEAM SEVAAALRAV GEGFVRMEER RLVLSIQMEK ERMEFEMKRT 420 QTMLDAQQLF LEAFLGKQHL PHKKARVSPA MED

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

LLPPAAGFPI RRKKSGRGRP RPTGEKARRG GHHHPPRPDT ALGHRGTDSA QCGAASSSSL  60
PSAAALRLHD KPLGGTTAPL RPPPHAAAQR WCRSPAGHFT ARPTPAAHHR TAPPLPPPPP  120
PYYDRFRSSS VPHLHHQTLD AFAAADRPSR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG  180
GGGLGGGSGR RLPPPCWTHE ETLALIEAYR DRWEMLRKGN LRAADWDDVA DAVTSRCGRF  240
PTATPKTGVQ CRHKIEKLRK RYRAERGRSA GRSKGPKWPF YQLLHDLAGN GAPDPSPNAI  300
VKIKTKGPAP PASPPSPVSS PSSEEEAVRS RSLHGLISNG GAGSGLRFTI PKASRTRPSS  360
AAATRPDKSS NQGDTESEAM SEVAAALRAV GEGFVRMEER RLVLSIQMEK ERMEFEMKRT  420
QTMLDAQQLF LEAFLGKQHL PHKKARVSPA MED

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03057.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008659928.1	1e-152	trihelix transcription factor ASIL1
TrEMBL	A0A3L6DCX4	1e-151	A0A3L6DCX4_MAIZE; Trihelix transcription factor ASIL2
STRING	GRMZM2G428470_P01	1e-152	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	5e-16	Trihelix family protein