PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03056.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 278aa    MW: 29465.6 Da    PI: 7.756
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03056.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1801.4e-55202345170
                         YABBY   5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 
                                   s +eq+Cyv+Cn C+tilavs             vP +slfk+vtvrCGhCt+llsvnl+       + +a ++l+  ++ 
  Zpz_sc03056.1.g00060.1.am.mk  20 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQS 100
                                   578****************8777777777777779*************************998676778888988887777 PP

                         YABBY  70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117
                                   +                     l+e+   + ++++ n  ++++as+  ++++      + +++ e+p   vp v+r     
  Zpz_sc03056.1.g00060.1.am.mk 101 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 181
                                   78889999******9999998766777777777777777777777666655447776644444444311345577644444 PP

                         YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                    PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  Zpz_sc03056.1.g00060.1.am.mk 182 SPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 234
                                   7**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-5921234IPR006780YABBY protein
SuperFamilySSF470956.15E-8171227IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-4183226IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MMSSSSSSTA AFPLDHLAPS PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF  60
KTVTVRCGHC TNLLSVNLRG LLLPPAAPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP  120
SLLMEQASAN LSSITGNSYS SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL  180
DSPEKRQRVP SAYNRFIKDE IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL  240
KKTFKTQDGA EDMLLKDGLY AAAAAAAAAA VNTGVTPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03056.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155220.11e-136protein YABBY 4-like isoform X1
SwissprotA2X7Q31e-123YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-123YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3B6QIL11e-135A0A3B6QIL1_WHEAT; Uncharacterized protein
TrEMBLA0A453P6431e-135A0A453P643_AEGTS; Uncharacterized protein
STRINGTraes_6DL_59DB06B9F.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]