PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02844.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 335aa    MW: 37954.1 Da    PI: 6.417
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02844.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-2667163186
                      trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                   +Wt+++v++Li+a+++++e+++++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++
  Zpz_sc02844.1.g00040.1.sm.mk  67 KWTDSMVKLLITAVSYTGEDYGADLgggrrnfsimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRG 147
                                   7*********************9744455677788********************************************** PP

                      trihelix  72 .tsessstcpyfdqle 86 
                                    +++++ + +++d+++
  Zpz_sc02844.1.g00040.1.sm.mk 148 tACNVVANPALLDSMN 163
                                   5599999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2065189No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSANRVSEAD DFPGFQFKEH GQTDNNQHHS HHSKNSMSDD EEHELTEDAN ENPSGKGKKS  60
SAWHRMKWTD SMVKLLITAV SYTGEDYGAD LGGGRRNFSI MQKKGKWKAI SKVMGERGCH  120
VSPQQCEDKF NDLNKRYKRL TDILGRGTAC NVVANPALLD SMNHLTDKMK EDAKKIMSSK  180
HLFYEEMCSY HNNNRANLPE DPALQHSLQL ALRCKEDHDS RRDVFGDGDE DDQSADSDYY  240
EDDEEHHAVH TNMREPSMLK RMLHSDMALV NSSPHEGSAR SDPYGIITAN INKNCPDGSN  300
LASQSLEIQK RRLQIDAKEL ELTKQRLKGC SLLAF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02844.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143969.21e-179uncharacterized protein LOC100276786
RefseqXP_020403187.11e-179uncharacterized protein LOC100276786 isoform X1
TrEMBLA0A0A9LZQ40.0A0A0A9LZQ4_ARUDO; Uncharacterized protein
STRINGSb05g003890.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-79sequence-specific DNA binding transcription factors