PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02844.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 464aa MW: 51219.9 Da PI: 4.5485 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 198.3 | 4.7e-61 | 91 | 454 | 2 | 372 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 +lLl+ Aeav+ +d +la+a+L++l +l +++ +++ la +f+++L++++++ y p+e + +s + Zpz_sc02844.1.g00010.1.sm.mk 91 SDLLLTGAEAVEVRDSSLASAVLSKLDHLlpdicENEANGSLHHLAYHFAQGLHHQMSG----AYTPSYPQELP---QSGV 164 689*************************988875566669******************9....56555566665...7788 PP GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skee 157 ++a+ + +e sP+ kf+h+t+NqaIl+a+ + vH++Df+i +G+QW++++ L+ +g s+ +T+v +sg s ++ Zpz_sc02844.1.g00010.1.sm.mk 165 MSAHLMIQEFSPFAKFAHFTTNQAILDATMDDMDVHVVDFNIAEGVQWASFMSDLSR--HGDKSFHLTAVIIDDSGySDNT 243 8888899************************************************98..5778999***999888889999 PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 +t rL++fAe+l +pf++n+l + +l++++ + + ++++++ +l +sl++ r + +vk+l+Pk+ Zpz_sc02844.1.g00010.1.sm.mk 244 CCTTVLRLSEFAESLSLPFKYNFLRLHYAG--DLDDFSRNCQGSVIISCDT--TNLC--YTSLSKLRILLTGCVKKLQPKL 318 99*********************9333333..668898888999***9988..4444..2456666678889********* PP GRAS 239 vvvveqe.......adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310 vv+ve+e a+++++sF+e f+e l+++++lf+sl++ + + + vEr ++g++i++ v + g e Zpz_sc02844.1.g00010.1.sm.mk 319 VVIVEEElvrmgkeASLSHASFVEFFFEGLHHFTVLFESLASCFNGGDdkVCLRLVERDVVGPKIQDFVGQHGCE------ 393 ******96554444555666********************888766663466789******************98...... PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 tl+ + GF p +ls + +qa+ll+ ++ + + v +e+g l l+Wk+rpLvsvS+ Zpz_sc02844.1.g00010.1.sm.mk 394 TLKAAAGANVLEGFMPCELSACNIAQARLLVGLFS-RSFGVANEKGRLQLCWKSRPLVSVSV 454 455555556678***********************.66***********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.155 | 64 | 437 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-58 | 91 | 454 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MRQLGYEVGT DSLWSPHVTL HDNATAADLS PIQLDDREFV DDTVGIDSSV FHEQYCFDAD 60 AFANCDVRFL SEEGNNLAAI QEELMEDSSL SDLLLTGAEA VEVRDSSLAS AVLSKLDHLL 120 PDICENEANG SLHHLAYHFA QGLHHQMSGA YTPSYPQELP QSGVMSAHLM IQEFSPFAKF 180 AHFTTNQAIL DATMDDMDVH VVDFNIAEGV QWASFMSDLS RHGDKSFHLT AVIIDDSGYS 240 DNTCCTTVLR LSEFAESLSL PFKYNFLRLH YAGDLDDFSR NCQGSVIISC DTTNLCYTSL 300 SKLRILLTGC VKKLQPKLVV IVEEELVRMG KEASLSHASF VEFFFEGLHH FTVLFESLAS 360 CFNGGDDKVC LRLVERDVVG PKIQDFVGQH GCETLKAAAG ANVLEGFMPC ELSACNIAQA 420 RLLVGLFSRS FGVANEKGRL QLCWKSRPLV SVSVYTPVPK ENIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-27 | 131 | 457 | 54 | 379 | Protein SCARECROW |
5b3h_D | 1e-27 | 131 | 457 | 54 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02844.1.g00010.1.sm.mk |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317590.1 | 0.0 | uncharacterized protein LOC8070665 | ||||
Refseq | XP_025826871.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1Z5RGS2 | 0.0 | A0A1Z5RGS2_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2S3ICH5 | 0.0 | A0A2S3ICH5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CK87 | 0.0 | A0A2T7CK87_9POAL; Uncharacterized protein | ||||
STRING | Sb05g003820.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7684 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-35 | GRAS family protein |