PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02551.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 515aa    MW: 56069.5 Da    PI: 10.3007
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02551.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-1415111399
                                   EE-..-HHHHT..T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                            B3   3 kvltpsdvlks..grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                   kvl+p+++++s  + l+++   a++   gg  ++++  ++    g++W v +   + +++ +l++GW eFv a+g+ +  f
  Zpz_sc02551.1.g00050.1.am.mk  15 KVLLPPSSSSSscHKLRISDALARRLddGGAGAGGTAFVVSPVGGKVWHVAV--GRDDDGAFLGRGWPEFVAAHGIGASWF 93 
                                   5555555555546889*******9999866666776777777899*******..*************************** PP

                                   EEEEE-SSSEE..EEEEE-S CS
                            B3  80 vvFkldgrsefelvvkvfrk 99 
                                   vvF++dg  ++ l+vk+f++
  Zpz_sc02551.1.g00050.1.am.mk  94 VVFRHDG--GGVLTVKAFDT 111
                                   ****765..77789*99987 PP
2B344.62.6e-14146230997
                                   HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                            B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                     ++++ + +p kf+++h   g   ++s +  l ++ g+ W+v++  +  sg+++l++GW++F  +ng++eg+ ++++++g
  Zpz_sc02551.1.g00050.1.am.mk 146 RGFTEK-MAIPLKFVRTHltaG---TNSDMPALLNLGGKYWRVEVE-KDVSGSVFLSTGWSRFLASNGINEGEALLLRYEG 221
                                   445554.99*********8643...35567899************4.44456799************************** PP

                                   SSEE..EEEEE CS
                            B3  87 rsefelvvkvf 97 
                                   ++ f  +vkvf
  Zpz_sc02551.1.g00050.1.am.mk 222 NMVF--TVKVF 230
                                   **99..88877 PP
3B347.24.1e-15297388186
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   ++k+++++++l+++ + l  +f++++g ++++ +tlt ++ s         sW+v+ +++ +s   + ++GW +F+++n+L
  Zpz_sc02551.1.g00050.1.am.mk 297 WIKKEIKAYALSNH-VPLAGRFCKAIGFSEPCVITLTTTTYSTasggaaaGSWKVRGCVDSHSTCKLGGRGWTSFCRDNRL 376
                                   78999********9.***********99999987777777666889***********999999889999************ PP

                                   -TT-EEEEEE-S CS
                            B3  75 kegDfvvFkldg 86 
                                   +egD+++F  +g
  Zpz_sc02551.1.g00050.1.am.mk 377 REGDVCTFNIVG 388
                                   ********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.3E-914112IPR003340B3 DNA binding domain
PROSITE profilePS5086310.06615112IPR003340B3 DNA binding domain
CDDcd100176.19E-915110No hitNo description
PfamPF023621.1E-1116111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-1419113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1323114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-19134235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20135238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.155137233IPR003340B3 DNA binding domain
CDDcd100174.17E-15138230No hitNo description
SMARTSM010193.7E-13140233IPR003340B3 DNA binding domain
PfamPF023629.0E-12149230IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-12294398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-12295398IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.068298400IPR003340B3 DNA binding domain
PfamPF023621.4E-9298388IPR003340B3 DNA binding domain
CDDcd100171.37E-6347384No hitNo description
PROSITE profilePS508639.361347400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGPTGDHRAI SRHLKVLLPP SSSSSSCHKL RISDALARRL DDGGAGAGGT AFVVSPVGGK  60
VWHVAVGRDD DGAFLGRGWP EFVAAHGIGA SWFVVFRHDG GGVLTVKAFD TSSCLHEFSR  120
RLIVAANGSD AAIGPRRPQF IKVLLRGFTE KMAIPLKFVR THLTAGTNSD MPALLNLGGK  180
YWRVEVEKDV SGSVFLSTGW SRFLASNGIN EGEALLLRYE GNMVFTVKVF GLDGCEKSCN  240
KPRDEAVTIS WVQDAPSSFP AGQREGRRDK RQAPSVAETK AKRPRSNCTY EIGSPSWIKK  300
EIKAYALSNH VPLAGRFCKA IGFSEPCVIT LTTTTYSTAS GGAAAGSWKV RGCVDSHSTC  360
KLGGRGWTSF CRDNRLREGD VCTFNIVGPT LWHVDIARRC HPSRVREEPH GGRTNERRAS  420
RPPQAGGHQI PAPSGNVLLL RLEGSMAFTV KVLGPDGCQK SFESRKEHRR ILDLEQSGQA  480
SQYPSSRSGN PFDFFREKEN RQGYYPSSRS GRRPG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02551.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.11e-114putative B3 domain-containing protein Os04g0347400
STRINGPavir.Ga02236.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.19e-14B3 family protein