PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02246.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 296aa    MW: 30997.7 Da    PI: 9.6168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02246.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007116138123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+dCg+s+     L  H ++H
  Zpz_sc02246.1.g00010.1.sm.mk 116 YTCKDCGRSYAKFRALGGHVSLH 138
                                   9*********9888887777766 PP
2zf-C2H216.82e-05175197123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +Cgk+Fs    L  H+r H
  Zpz_sc02246.1.g00010.1.sm.mk 175 HVCRKCGKVFSKGTALGGHMRAH 197
                                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.702116143IPR007087Zinc finger, C2H2
SMARTSM003551.2116138IPR015880Zinc finger, C2H2-like
PfamPF139120.0013116139IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-8116138No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-8170197No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5174199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-8174197IPR007087Zinc finger, C2H2
SMARTSM003550.048175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.612175202IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGSSSPPLRR LRPDDDDADK GRFVSDDGVR DLRPQSPTRT WESDRTISDD DDDVSPASVL  60
RTEPNERVVG VDGGWATTGK RSRSTEGKQA ATAAPAAKQL PRPVPPPRDD QAPLKYTCKD  120
CGRSYAKFRA LGGHVSLHRI REREAAAAAA AAAGTGARDG GALAHRGRKS EGRTHVCRKC  180
GKVFSKGTAL GGHMRAHAGD AAVAPVVPEG NKKRCLEPAV DDFVASSTPG LSSAAPIMPE  240
GNKKRCHEPA VDDVAAPPTA GVSSAAPIKT EEASSPAPVR SGRVLLFGVD ISRPPV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02246.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-10zinc-finger protein 2