PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02195.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 360aa MW: 39039.6 Da PI: 7.2238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02195.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.5e-08	114	134	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd+C FaHg Zpz_sc02195.1.g00010.1.am.mk 114 ACPDFRK-GGCRRGDNCEFAHG 134 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.47E-5	108	138	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	109	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	110	136	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-6	114	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-6	114	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	144	168	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	144	167	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMMGEGMSAP PWSQHHLPVS GVDVGDDEVA PYLLAALQQH LPSNTDFSCN DDDDDEATVM 60 AAAAYDGDEF RMYEFKVRRC TRARSHDWTD CPFAHPGEKA CRRDPRKYHY SGTACPDFRK 120 GGCRRGDNCE FAHGVFECWL HPTRYRTQPC KDGTACRRRV CFFAHTPDQL RVVPSQQSSP 180 RGVAAASSPL AASYDGSPLR RQAFESYLGK SVMASSPTST LVPPSRSSSS DSPPLSPDGA 240 ATYLRGSWPG VGSPVNDVLA SLRQLRLSKA NSSPSGGWSG YPASAFAYGS PKAGGLYSLP 300 TTPRATTTTM AAATGFMHNL EPLDVGFAVD EEPVQRVESG RALRAKVFER LSKEVILSDA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMMGEGMSAP PWSQHHLPVS GVDVGDDEVA PYLLAALQQH LPSNTDFSCN DDDDDEATVM  60
AAAAYDGDEF RMYEFKVRRC TRARSHDWTD CPFAHPGEKA CRRDPRKYHY SGTACPDFRK  120
GGCRRGDNCE FAHGVFECWL HPTRYRTQPC KDGTACRRRV CFFAHTPDQL RVVPSQQSSP  180
RGVAAASSPL AASYDGSPLR RQAFESYLGK SVMASSPTST LVPPSRSSSS DSPPLSPDGA  240
ATYLRGSWPG VGSPVNDVLA SLRQLRLSKA NSSPSGGWSG YPASAFAYGS PKAGGLYSLP  300
TTPRATTTTM AAATGFMHNL EPLDVGFAVD EEPVQRVESG RALRAKVFER LSKEVILSDA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02195.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817903.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	1e-175	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2S3HYP5	1e-180	A0A2S3HYP5_9POAL; Uncharacterized protein
STRING	ORUFI01G06440.1	1e-173	(Oryza rufipogon)
STRING	OS01T0192000-01	1e-173	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-81	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]