PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02060.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 444aa MW: 46938.1 Da PI: 8.1588 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.4 | 2.3e-26 | 265 | 323 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v+++tY eH h+ Zpz_sc02060.1.g00070.1.am.mk 265 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 323 799***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 4.71E-24 | 263 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-31 | 264 | 324 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-26 | 264 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.126 | 265 | 325 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-22 | 266 | 323 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MPCSSVQIPA QSFILPRPPC PPLEVDFLLV PSGPFCTIGR RASPDPAGLR LDQRQKSTLL 60 PPSLAEHASS HPRSSRVKGW LGSSRRAFMR GPLLLVSMES FNDWDLQAVV RSCSFAHAEE 120 PAGAPRAAAA PVRDVAAAQE RRAPVVRAAA PVPVPGRASA AAGVVVKQEA SSSRMHGLEY 180 LDLDHKPFLL PPSATTAAAS RAGDDVREVM ISFPAASTSG AQSRAVPPGR NKAGPRTPRP 240 KRSKKSQLKK VVREMPVADG GVSASDPWAW RKYGQKPIKG SPYPRGYYKC SSMKGCMARK 300 LVERSPAKPG VLIVTYMAEH CHPVPTQLNA LAGTTRHTKS ASAATAAEDR PAASSPKSHE 360 QQGPVSDEAA RCDAADSNEA STAPVAAVEC GGTEEAAAAL ADDDGEFLPA GMDLDELLAT 420 VDDDFDFEPV PDDDDGVLGR RLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-18 | 245 | 326 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 8e-18 | 245 | 326 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02060.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111416 | 1e-108 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. | |||
GenBank | AY870601 | 1e-108 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458190.1 | 1e-121 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A1E5UWP3 | 1e-124 | A0A1E5UWP3_9POAL; WRKY transcription factor 22 | ||||
STRING | Sb03g028440.1 | 1e-121 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-34 | WRKY family protein |