PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01581.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 811aa    MW: 88532 Da    PI: 8.3483
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01581.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.3e-09175197326
                                     S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                     t  C +fa+ G C++G++C+FaH+
  Zpz_sc01581.1.g00160.1.sm.mkhc 175 TDQCYNFAK-GRCNRGASCRFAHD 197
                                     678******.*************7 PP
2zf-CCCH22.42.2e-07236255525
                                     --SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                     +C+ffa+ G+C++G++C++ H
  Zpz_sc01581.1.g00160.1.sm.mkhc 236 PCKFFAA-GHCRRGANCPYLH 255
                                     8**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.009488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.35793115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6175198IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033175198IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6175197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201231258IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5231257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7232256IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5235255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4236257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
RPPPKRHHPP PRAAGPPLPA SSSPPRAGVT ISQLVQTSVT RTGDSAGRTA LRLAEQKSFQ  60
KQKQKQEQEQ KQRARQEQKP KTERGRTSGG LLPCRDFIAG RCRRGLNCRF PHEDGGHKPF  120
EEHYPTGPKE RYGYQSKEFM DSREQDDFLQ SRHSRGRFDD EAWERSEPQR EYRSTDQCYN  180
FAKGRCNRGA SCRFAHDDSA PQGGWRDEAR QNAYDRLGPD PSYGNRIEPR RVNKNPCKFF  240
AAGHCRRGAN CPYLHEEAPQ SQIGLSAPDE PSNYNDGATG RGNFSSWDEQ NNSVLATSQI  300
VSRDDRENPV SQSIGRTGSR YEYENRHPKD AGKSQYQIIP PEDFGSQVHK SDVAASQQTQ  360
LLTPVQHSAD SMNNDKVSGT DGHNAPGTAG NLSMHSGMHA SNVAEDLGRI LQSQDAISQI  420
HGPPSLPVTA HLQNNTSSLP SNSHMQQSSF SVHPQDQFLG TQAAANNSTH SVQGHPVGPH  480
TGHGQLGYGL GLEALPDLSA HNLHNFSVAG QVPQDLPIGV HTGQPQAAID LPRLGQDSGA  540
QAQSIQTMQH FQTIAPHVPA SSSADMAGAS VPHNAAKSED IHRVTASLAQ YFGNAGSVGL  600
QSSEPNMNSN LMVTSSAVPP AVQPNPWPWA QQHAGMVQPA LAVPPEQHQH APQTSQMPVA  660
VGSSTGNSMP LPHSGPSTIQ AAASVINDAM PSEKKKGETK HTDAEANEDG ENKKSKDSKA  720
LKMFKIALAD FVKEALKPTW KEGQLSREVY KTIVKKVIDK VTSTVENTPP TKEKIDIYMA  780
FSKDKLNKLV QMWIIFMNGR EALLATVLGF H
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01581.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820462.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_025820463.10.0zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A2S3HZY10.0A0A2S3HZY1_9POAL; Uncharacterized protein
STRINGPavir.Fa02279.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-08C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]