PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01551.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 507aa    MW: 55034.2 Da    PI: 8.885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01551.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-174893251
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++
  Zpz_sc01551.1.g00170.1.am.mk 48 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAAL 93
                                  69****998.**********843...6*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.1644893IPR001471AP2/ERF domain
SMARTSM003803.4E-2348106IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-164894IPR016177DNA-binding domain
PfamPF008471.3E-114893IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-254894IPR001471AP2/ERF domain
PRINTSPR003671.1E-94960IPR001471AP2/ERF domain
CDDcd000181.85E-154983No hitNo description
PRINTSPR003671.1E-97187IPR001471AP2/ERF domain
SuperFamilySSF1014478.63E-5403413No hitNo description
SuperFamilySSF1014478.63E-5473490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSSEGEVCSP ASSGGTQTSS PPSSSAAADA RHGGVEKRAR DVGGRHPTYR GVRMRAWGKW  60
VSEIREPRKK SRIWLGTFPT PEMAARAHDA AALVQAAAKE PPPPASGGQT QQEEQADEEL  120
EAIVELPRLD EDAAELVTFC SSSSASSWCV DPVWMDGAGY VDSAAAQDDL LFGLDGGDHC  180
WAQSVGALLS TTQKTSCAAI VATHTHERSP VVRSCSRSIF SGRPAGGPLP LDDGSVHVLS  240
RSVEQYGDDE GPVRAKYVLR LAPFGVQACR YCSRLRLARR CQLIDTALRT RTDPYLAAST  300
PSPRLLAGEA KGMAEWEYFV IRNWLLLERA KRGNGTSTMH LLQGYGRAMH ACELQVRSVR  360
QSSQGSIRTM DMHELGARRM RRPTSLHGTG NGAHIDSRQV RLPPPPPPPP PPPYCAPDSI  420
VIVTTRDPRL DRPVDVERVR SCPVEARTHA AIIKLAGATV AAVCYYSRSI RAQCVERTDR  480
SKGVIWFTHA SSSSSRCMRR RLPGSIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-123592159Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01551.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036826e-67AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149626e-67AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1801423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-22ERF family protein