PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01429.1.g00170.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 399aa MW: 41675.3 Da PI: 4.7662 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 98.9 | 4.8e-31 | 86 | 185 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf++sksql+eK+rrLKkK++ + ++ ++g + Zpz_sc01429.1.g00170.1.am.mk 86 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFSKSQLIEKLRRLKKKYRVCAARmGAQGAAF 166 79************************99877778*************************************99899***** PP DUF573 79 sfskehdqkifelskkiWg 97 +f+++h+ i+++++ iW+ Zpz_sc01429.1.g00170.1.am.mk 167 AFRSAHEGAIYDVARHIWR 185 ******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.7E-27 | 87 | 184 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 399 aa Download sequence Send to blast |
MAGADDPAAA AAAASSSAGD EDDEGTDTDA SNSDRAAPQD QDPDRQLLAD NAAPAPSPPA 60 AAAPEPTGAV APPPQPAAAT DDSRRLFQRL WTDEEELLIL RGFLDFTARR GTTFASHQYD 120 TGPFYEEIRR RLSFDFSKSQ LIEKLRRLKK KYRVCAARMG AQGAAFAFRS AHEGAIYDVA 180 RHIWRPAVRR DGGQGGGGDA SDEDDINPAA ATAASAALPG VVDDGAGGSA SAHTPRAKGG 240 RRVRRKTAEE LEPQALPTTT SPLILNDVAR QPLVVAVDNL TPTNSQLPVL APSPAPAASG 300 ATEEAVRAIL SPLLRELVSS VTVAGQTGLG LGLNMGFGGI GGVDILGPGL GGGVSVHGSS 360 GDEKWRRQQI LELEVYLKRI ELVREQVAAA LEELRSSEG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01429.1.g00170.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065406 | 1e-133 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. | |||
GenBank | JX428457 | 1e-133 | JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457566.1 | 1e-133 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2T7DPJ7 | 1e-136 | A0A2T7DPJ7_9POAL; Uncharacterized protein | ||||
STRING | Sb03g009480.1 | 1e-133 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 4e-29 | DNA-binding storekeeper protein-related transcriptional regulator |