PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01301.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 157aa    MW: 16376.3 Da    PI: 7.6023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01301.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154365123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C +C++ F+++  L  H++ H
  Zpz_sc01301.1.g00150.1.am.mk 43 FACCYCPRKFRSSQALGGHQNAH 65
                                  78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0344370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDRVLGSCIP GMEMVDRDGD GLDLSLSLQC SPSSPPRFQL AVFACCYCPR KFRSSQALGG  60
HQNAHKLQRN LARRGHHPAP VAAVVADQGG NYNNPAGSAS APHSAAEFGV VDAWGEGRDH  120
RGHLHHVTAT GGASASSAGA KGAGEVKEEI IDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01301.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169428.12e-49uncharacterized protein LOC100383297
TrEMBLA0A3L6G4H64e-48A0A3L6G4H6_MAIZE; Zinc finger protein 2
TrEMBLC0PEV75e-48C0PEV7_MAIZE; C2H2 zinc finger malformed spikelet
STRINGGRMZM2G074793_P019e-49(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-12zinc-finger protein 1